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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gttgagtgtctcacttttttctcatgattcatatctctttgaccatcgagcttctcaaacattgattgatctttttgttttgttgggactgtaacattttcagGTGACAGTTCGGCTCAGAGAGGACCCTGAAGGCCGTAAAGACTTGCCAGAGATGAGCATCGAAAGTTTGCTTGATGAATTCAAGTTCAAGACAGTCAACT

Basic information

species Arabidopsis thaliana
transcript AT1G17960.1
intron # 11
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|19797227|gb|AU229154.1|AU229154
EST:     CATACAACTACATACTGGTCTTAGGTCAAAAAGAGGTTGCAACTGGACAG                         GTGACAGTTCGGCTCAGAGAGGACCCTGAAGGCCGTAAAGACTTGCCAGAG
genomic: CATACAACTACATACTGGTCGTAGGTCAAAAAGAGGTTGCAACTGGACAGgttgagtgtc ... acattttcagGTGACAGTTCGGCTCAGAGAGGACCCTGAAGGCCGTAAAGACTTGCCAGAG






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

agcttctcaaacattgattgatctttttgttttgttgggactgtaacattttcagGTGACAGTTCGGCTCAGAGAGGACCCTGAAGGCCGTAAAGACTTGCCAGAGATGAGCATCGAAAGTTTGCTTGATGAATTCAAGTTCAAGACAGTCAACT
                                        ctgtaac  putative branch site (score: 3)
 cattttc  CT-rich tract
 tttttgtttt  TA-rich tract