1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' |
gtaaaactaactaacttaaactgttcttttgtgggactcaccattctttttggtttgggaatgctaaaattgttgtgttcgttgttcctacagTGTTCTTGGGGAAGCAAGCCAACTCCAGCAGGAACAGCTTCAAACCCGCTTCCTCCACCAGCTCCTGCACCAATCCCGGGATTCTCAGCGAGTGATCTCT
species | Arabidopsis thaliana |
transcript | AT1G17370.1 |
intron # | 11 |
splice site | 3' |
intron type | U2 |
EST: CTATTCAGATGGGAAACACACATTCCTACCTTAGTGGCAGGCAAATGAAG TGTTCTTGGGGAAGCAAGCCAACTCCAGCAGGEST: gi|124784149|gb|EH873913.1|EH873913
genomic: CTATTCAGATGGGAAACACACATTCCTACCTTAGTGGCAGGCAAATGAAGgtaaaactaa ... gttcctacagTGTTCTTGGGGAAGCAAGCCAACTCCAGCAGG
EST: ATTCCTACCTTAGTGGCAGGCAAATGAAG TGTTCTTGGGGAAGCAAGCCAACTCCAGCAGGAACAGCTTCAAACCCGCTTEST: gi|125305517|gb|EL319602.1|EL319602
genomic: ATTCCTACCTTAGTGGCAGGCAAATGAAGgtaaaactaa ... gttcctacagTGTTCTTGGGGAAGCAAGCCAACTCCAGCAGGAACAGCTTCAAACCCGCTT
EST: CTATTCAGATGGGAAACACACATTCCTACCTTAGTGGCAGGCAAATGAAG TGTTCTTGGGGAAGCAAGCCAACTCCAGEST: gi|164221781|gb|ES147385.1|ES147385
genomic: CTATTCAGATGGGAAACACACATTCCTACCTTAGTGGCAGGCAAATGAAGgtaaaactaa ... gttcctacagTGTTCTTGGGGAAGCAAGCCAACTCCAG
EST: TTCCTACCTTAGTGGCAGGCAAATGAAG TGTTCTTGGGGAAGCAAGCCAACTCCAGCAGGAACAGCTTCAAACCCGCT-EST: gi|163996643|gb|ES055971.1|ES055971
genomic: TTCCTACCTTAGTGGCAGGCAAATGAAGgtaaaactaa ... gttcctacagTGTTCTTGGGGAAGCAAGCCAACTCCAGCAGGAACAGCTTCAAACCCGCTT
EST: TATTCAGATGGGAAACAACACATTCCTACCTTAGTGGCAGGCAAATGAAG TGTTCTTGGGGAAGCAAGCCAACEST: gi|125044329|gb|EL116598.1|EL116598
genomic: TATTCAGATGGGAAAC-ACACATTCCTACCTTAGTGGCAGGCAAATGAAGgtaaaactaa ... gttcctacagTGTTCTTGGGGAAGCAAGCCAAC
EST: CTATTCAGATGGGAAACACACATTCCTACCTTAGTGGCAGGCAAATGAAG TGTTCTTGGGGAAGCAAGEST: gi|124837223|gb|EH921662.1|EH921662
genomic: CTATTCAGATGGGAAACACACATTCCTACCTTAGTGGCAGGCAAATGAAGgtaaaactaa ... gttcctacagTGTTCTTGGGGAAGCAAG
EST: CTATTCAGATGGGAAACACACATTCCTACCTTAGTGGCAGGCAAATGAAG TGTTCTTGGGGAAGCAAGCCAACTCCAGC
genomic: CTATTCAGATGGGAAACACACATTCCTACCTTAGTGGCAGGCAAATGAAGgtaaaactaa ... gttcctacagTGTTCTTGGGGAAGCAAGCCAACTCCAGC
caccattctttttggtttgggaatgctaaaattgttgtgttcgttgttcctacagTGTTCTTGGGGAAGCAAGCCAACTCCAGCAGGAACAGCTTCAAACCCGCTTCCTCCACCAGCTCCTGCACCAATCCCGGGATTCTCAGCGAGTGATCTCT
tgctaaa putative branch site (score: 2)
ttgttcct putative PPT
taaaattgtt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaaaactaactaacttaaactgttcttttgtgggactcaccattctttttggtttgggaatgctaaaattgttgtgttcgttgttcctacagTGTTCTTGGGGAAGCAAGCCAACTCCAGCAGGAACAGCTTCAAACCCGCTTCCTCCACCAGCTCCTGCACCAATCCCGGGATTCTCAGCGAGTGATCTCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGCTC