1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' |
gtataaaacatctatatgactttatcatcacaattgattcagtttccacctgttggcttggacttgcacatcgataattgaccttaatagcttttattaaatttgatcagCCTGGTGACGACTCCTATGAATCATACATAGCAGAGAAGGATGGAATTCTCTCATCTTTGGCAAGACGTGCAAAG
species | Arabidopsis thaliana |
transcript | AT1G17290.1 |
intron # | 11 |
splice site | 3' |
intron type | U2 |
EST: CCAACATCTCTGGTCAAATTCTTGCTAGCCTCATCATGAGCCCACCCAAG CCTGGTGACGACTCCTATGAATCATACATAGCAGAGAAGGATGGAATTCTCEST: gi|124880463|gb|EH959365.1|EH959365
genomic: CCAACATCTCTGGTCAAATTCTTGCTAGCCTCATCATGAGCCCACCCAAGgtataaaaca ... atttgatcagCCTGGTGACGACTCCTATGAATCATACATAGCAGAGAAGGATGGAATTCTC
EST: AGCCTCATCATGAGCCCACCCAAG TEST: gi|124880463|gb|EH959365.1|EH959365
genomic: AGCCTCATCATGAGCCCACCCAAGgtataaaaca ... atttgatcag-
EST: AGCCTCATCATGAGCCCACCCAAG TEST: gi|116471643|gb|EG514235.1|EG514235
genomic: AGCCTCATCATGAGCCCACCCAAGgtataaaaca ... atttgatcag-
EST: CCAACATCTCTGGTCAAATTCTTGCTAGCCTCATCATGAGCCCACCCAAG CCTGGTGACGACTCCTATGAATCATACATAGCAGAGAAGGATGGAATTCTC
genomic: CCAACATCTCTGGTCAAATTCTTGCTAGCCTCATCATGAGCCCACCCAAGgtataaaaca ... atttgatcagCCTGGTGACGACTCCTATGAATCATACATAGCAGAGAAGGATGGAATTCTC
gcttggacttgcacatcgataattgaccttaatagcttttattaaatttgatcagCCTGGTGACGACTCCTATGAATCATACATAGCAGAGAAGGATGGAATTCTCTCATCTTTGGCAAGACGTGCAAAG
ttaatagcttttatta TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtataaaacatctatatgactttatcatcacaattgattcagtttccacctgttggcttggacttgcacatcgataattgaccttaatagcttttattaaatttgatcagCCTGGTGACGACTCCTATGAATCATACATAGCAGAGAAGGATGGAATTCTCTCATCTTTGGCAAGACGTGCAAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GATGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAAAG