1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' |
gtacctacacttacattcctcaccaccattatctcaacatgtaatgccatttctcatcccttctaacacttgcgttaaacctttctgatcagCTTGAGGCAATGGGGTTTGATAGAGCAATAGTCATAGAAGCCTTCCTTTCCTGTGACCGTAACGAGGAATTGGCTGCAAACTATCTACTAGAGCACTCAG
species | Arabidopsis thaliana |
transcript | AT1G16190.1 |
intron # | 11 |
splice site | 3' |
intron type | U2 |
EST: TGCCCCACTCAGTCAACGTTACCCCTGAAGAGCAAGAATCAATTGAACGG CTTGAGGCAATGGGGTTTGATAGAGCAATAGTCATAGAAGCCTTCCTTTCCEST: gi|301502782|gb|HO208322.1|HO208322
genomic: TGCCCCACTCAGTCAACGTTACCCCTGAAGAGCAAGAATCAATTGAACGGgtacctacac ... ttctgatcagCTTGAGGCAATGGGGTTTGATAGAGCAATAGTCATAGAAGCCTTCCTTTCC
EST: TGCCCCACTCAGTCAACGTTACCCCTGAAGAGCAAGAATCAATTGAACGG CTTGAGGCAATGGGGTTTGATAGAGCAATAGTCATAGAAGCCTTCCTTTCC
genomic: TGCCCCACTCAGTCAACGTTACCCCTGAAGAGCAAGAATCAATTGAACGGgtacctacac ... ttctgatcagCTTGAGGCAATGGGGTTTGATAGAGCAATAGTCATAGAAGCCTTCCTTTCC
catgtaatgccatttctcatcccttctaacacttgcgttaaacctttctgatcagCTTGAGGCAATGGGGTTTGATAGAGCAATAGTCATAGAAGCCTTCCTTTCCTGTGACCGTAACGAGGAATTGGCTGCAAACTATCTACTAGAGCACTCAG
ttctaac putative branch site (score: 1)
cctttct putative PPT
ttaaa TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtacctacacttacattcctcaccaccattatctcaacatgtaatgccatttctcatcccttctaacacttgcgttaaacctttctgatcagCTTGAGGCAATGGGGTTTGATAGAGCAATAGTCATAGAAGCCTTCCTTTCCTGTGACCGTAACGAGGAATTGGCTGCAAACTATCTACTAGAGCACTCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGCA