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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaacctttactggatgatactataacagagaaaaacataagaaacagctgaaaaaggggtcaaaagataaactgtctttctttttttttggttaaaaccggaagttaatattgtgtagGTACCGGTAAACCGAGGGGTTCATGTTTCTTTCATAGACAAAAGTGTAAATTGTAAGGGGTTTCAGAACAATGGATTGTGATTTCTCTCTAACTAATTCA

Basic information

species Arabidopsis thaliana
transcript AT1G14530.1
intron # 11
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|19742064|gb|AU227417.1|AU227417
EST:     TGAACATGTTCAGAGAATCGAAACACTGAG                         GTACCGGTAAACCGAGGGGTTCATGTTTCTTTCATAGACAAAAGTGTAAAT
genomic: TGAACATGTTCAGAGAATCGAAACACTGAGgtaaccttta ... tattgtgtagGTACCGGTAAACCGAGGGGTTCATGTTTCTTTCATAGACAAAAGTGTAAAT
EST: gi|86076143|gb|DR371900.1|DR371900
EST:     CACAGTACCATCAAATCCAATGAACATGTTCAGAGAATCGAAACACTGAG                         GTACCGGTAAACCGAGGGGTTCATGTTTCTTTCATAGACAAAAGTGTAAAT
genomic: CACAGTACCATCAAATCCAATGAACATGTTCAGAGAATCGAAACACTGAGgtaaccttta ... tattgtgtagGTACCGGTAAACCGAGGGGTTCATGTTTCTTTCATAGACAAAAGTGTAAAT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

aagataaactgtctttctttttttttggttaaaaccggaagttaatattgtgtagGTACCGGTAAACCGAGGGGTTCATGTTTCTTTCATAGACAAAAGTGTAAATTGTAAGGGGTTTCAGAACAATGGATTGTGATTTCTCTCTAACTAATTCA
                                       agttaat  putative branch site (score: 4)
             tttctttttttttggt  TA-rich tract