Sequence
atgc intronic sequence ATGC exonic sequencegcaagtctctctcttaacatgaaatctcattgactcaatttttttcccaatagctaactaaaagaaccactctctcctcctctttcagAGTTCCAAACATCAAATTTAACGTGGCCAAAATGATGCAATCTCTCATTCCGATAGTCGACCAAGCG
Basic information
species | Arabidopsis thaliana |
transcript | AT1G13320.1 |
intron # | 11 |
splice site | 3' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: AT1G13320.1 (Arabidopsis thaliana), 3'ss of exon 11
lower sequence: PP1S214_34V6.1 (Physcomitrella patens), 3'ss of exon 10
-------------------------------gcaagtctctctcttaacatgaaatctcattgactcaatttttttcccaatagctaactaaaagaaccactctctcc---tcctctttcagAGTTCCAAACATCAAATTTAACGTGGCCAAAATGATGCAATCTCTCATTCCGATAGTCGACCAAGCG
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gtaccttagtttgctctccatatgtaatggaacttgattatcagtcaac-tgcaacagattggtattaggtaggttttcggatcttgtgtaattagctaattctctgtgattgcgatgacagGGTTCCAAACATCAAGTTTAACGTCGCCAAAATGCTGCAATCCATGATTCCGATTGTTGATTCCACT
upper sequence: AT1G13320.1 (Arabidopsis thaliana), 3'ss of exon 11
lower sequence: PP1S117_137V6.1 (Physcomitrella patens), 3'ss of exon 10
---------------------------gcaagtctctctcttaacatgaaatctcattgactcaatttttttcccaatagctaa--ctaaaa----gaacc-actctctcctcctcttt-----cagAGTTCCAAACATCAAATTTAACGTGGCCAAAATGATGCAATCTCTCATTCCGATAGTCGACCAAGCG
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gtacacttgtatgttctttttgtcgttgaattattcaaatgttacatgaacatgtatcatgtgtacatgtggggcatagggtaaatcttgagtgttgagcttactcttttatcttttgggatgacagGGTTCCAAACATCAAATTTAACGTCGCCAAAATGCTCCAATCTATGATTCCTATAGTTGAATCCACAMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|116425639|gb|EG468231.1|EG468231EST: ATCACATGTTCCAAACTCTTACCTGCGGTAATAACTGCATCTAAAGACAG AGTTCCAAACATCAAATTTAACGTGGCCAAAATGATGCAATCTCTCATTCC
genomic: ATCACATGTTCCAAACTCTTACCTGCGGTAATAACTGCATCTAAAGACAGgcaagtctct ... cctctttcagAGTTCCAAACATCAAATTTAACGTGGCCAAAATGATGCAATCTCTCATTCC
atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.ctcaatttttttcccaatagctaactaaaagaaccactctctcctcctctttcagAGTTCCAAACATCAAATTTAACGTGGCCAAAATGATGCAATCTCTCATTCCGATAGTCGACCAAGCG
aactaaa putative branch site (score: 2)
ccactctctcctcctc putative PPT
taactaaaa TA-rich tract