Sequence
atgc intronic sequence ATGC exonic sequencegtaagttaattcgttccgttccctccatattagcatctaatgatctaaattcattaaaaacactcttctggtgttattgtagTTGGAAGCTTGTATCCATCCGTTATTTGATGAGCTAAGGGACCCAAACACTCGTCTTCCCAATGGCCGACCACTTCCTCCACTTTTCAACTTTAAACCGC
Basic information
| species | Arabidopsis thaliana |
| transcript | AT1G09840.6 |
| intron # | 11 |
| splice site | 3' |
| intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: AT1G09840.2 (Arabidopsis thaliana), 3'ss of exon 12
lower sequence: GRMZM2G138676_T05 (Zea mays), 3'ss of exon 10
gtaagttaattcgttccgttccctccatattagcatctaa-tgatctaaattcattaaaaacactcttct-----------ggtgttattgtagTTGGAAGCTTGTATCCATCCGTTATTTGATGAGCTAAGGGACCCAAACACTCGTCTTCCCAATGGCCGACCACTTCCTCCACTTTTCAACTTTAAACCGC
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gtaaggccccatgcgcttttacgttcttgccactatctatctgggatgattccttgtgcaattttgttcttctaactaaggagtgattcttcagTTGGAGGCCTGTATGCACCCTTTCTTCGATGAGCTGAGAGACCCAAACACTCGTCTACCCAATGGTCGGCCTCTGCCGCCTCTCTTCAACTTCAGATCTC
upper sequence: AT1G09840.2 (Arabidopsis thaliana), 3'ss of exon 12
lower sequence: GLYMA16G00400.1 (Glycine max), 3'ss of exon 10
gtaagttaattcgttccgttccctcca----tattagcatct---------aatgatctaaattcattaaaaacactcttctggtgttattgtagTTGGAAGCTTGTATCCATCCGTTATTTGATGAGCTAAGGGACCCAAACACTCGTCTTCCCAATGGCCGACCACTTCCTCCACTTTTCAACTTTAAACCGC
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gtaagttgaatgtctccatttttttaaaaattatttacttttctcacctgggataatataaaattatttgacccatgatatta-tgacactgcagTTGGAAGCTTGCATTCATCCATTTTTTGATGAATTGAGGGACCCAAACACCCGCCTTCCTAATGGTCGACCACTTCCTCCACTGTTTAATTTTAAACCTC
upper sequence: AT1G09840.2 (Arabidopsis thaliana), 3'ss of exon 12
lower sequence: GLYMA12G28730.1 (Glycine max), 3'ss of exon 11
gtaagttaattcgttccgttccctccata---ttagcatct--aatgatctaaattcattaaaaacactcttctggtgttattgtagTTGGAAGCTTGTATCCATCCGTTATTTGATGAGCTAAGGGACCCAAACACTCGTCTTCCCAATGGCCGACCACTTCCTCCACTTTTCAACTTTAAACCGC
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gtaagttgaatgtctccattttttatttacttttctcaccttggatattataaaattattttactcatgatatta-tggcactgcagTTGGAAGCTTGCATTCATCCATTTTTTGATGAATTGAGGGACCCAAACACCCGCCTTCCTAATGCTCGACCACTTCCTCCACTGTTTAATTTTAAACCTC
upper sequence: AT1G09840.2 (Arabidopsis thaliana), 3'ss of exon 12
lower sequence: Vv12s0035g01060.t01 (Vitis vinifera), 3'ss of exon 10
gtaagtt-aattcgttc-----cgttccctc---catattagcatcta-----atgatctaa-----attcattaaaaa-cactcttctggtgttattgtagTTGGAAGCTTGTATCCATCCGTTATTTGATGAGCTAAGGGACCCAAACACTCGTCTTCCCAATGGCCGACCACTTCCTCCACTTTTCAACTTTAAACCGC
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gtaagtttaatacttttttaagcattccttctcacaaatttgcctgagtggaggtgatctaatggtaaagcatgaatgatcatttctctattgatattgcagTTGGAAGCTTGCATCCACCCTTTCTTTGATGAGTTGAGGGACCCTAGCACTCGTCTTCCTAATGGCCGTCCTCTTCCTCCCCTCTTTAATTTCAAACCTCMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|124789003|gb|EH878682.1|EH878682EST: CAATTTGAGATGTACAGCT TTGGAAGCTTGTATCCATCCGTTATTTGATGAGCTAAGGGACCCAAACACT
genomic: CAATTTGAGATGTACAGCTgtaagttaat ... gttattgtagTTGGAAGCTTGTATCCATCCGTTATTTGATGAGCTAAGGGACCCAAACACT
atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.tattagcatctaatgatctaaattcattaaaaacactcttctggtgttattgtagTTGGAAGCTTGTATCCATCCGTTATTTGATGAGCTAAGGGACCCAAACACTCGTCTTCCCAATGGCCGACCACTTCCTCCACTTTTCAACTTTAAACCGC
atctaaa putative branch site (score: 3)
taatgatctaaattca TA-rich tract
