Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   		10  
 5'  3'   		11  
 5'  3'   		12  
 5'  3'   		13  
 5'  3'   		14  
 5'  3'   		15  
 5'  3'   		16  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtattttaattgataatatgaatatttcatctttcagttcaatccaataaatattttgagttcaatccatttaaaaaatttaacttataattttttattttcagGATTTCCAAGTGCTATTGGCACATCCGTAATAGCCACAATTATG

Basic information

species Arabidopsis thaliana
transcript AT1G08930.1
intron # 11
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|125083012|gb|EL143727.1|EL143727
EST:     TGGGAGCTCCGGTGTTACCTATTATGCTAGTAGCCTCTTCAACAAAGGAG                         GATTTCCAAGTGCTATTGGCACATCC
genomic: TGGGAGCTCCGGTGTTACCTATTATGCTAGTAGCCTCTTCAACAAAGGAGgtattttaat ... ttattttcagGATTTCCAAGTGCTATTGGCACATCC
EST: gi|124774550|gb|EH864679.1|EH864679
EST:     TGGGAGCTCCGGTGTTACCTATTATGCTAGTAGCCTCTTCAACAAAGGAG                         GATTTCCAAGTGCTATTGG
genomic: TGGGAGCTCCGGTGTTACCTATTATGCTAGTAGCCTCTTCAACAAAGGAGgtattttaat ... ttattttcagGATTTCCAAGTGCTATTGG
EST: gi|125270112|gb|EL284197.1|EL284197
EST:     TGGGAGCTCCGGTGTTACCTATTATGCTAGTAGCCTCTTCAACAAAGGAG                         GATTTCCAAGTGCTATTGGCACATCCGTAATAGCCACAAT
genomic: TGGGAGCTCCGGTGTTACCTATTATGCTAGTAGCCTCTTCAACAAAGGAGgtattttaat ... ttattttcagGATTTCCAAGTGCTATTGGCACATCCGTAATAGCCACAAT
EST: gi|125038553|gb|EL110822.1|EL110822
EST:     TGGGAGCTCCGGTGTTACCTATTATGCTAGTAGCCTCTTCAACAAAGGAG                         GATTTCCAAGTGCTATTGGCACATCCGTAATAGCCACAATTATGGTT
genomic: TGGGAGCTCCGGTGTTACCTATTATGCTAGTAGCCTCTTCAACAAAGGAGgtattttaat ... ttattttcagGATTTCCAAGTGCTATTGGCACATCCGTAATAGCCACAATTATGGTT
EST: gi|124855455|gb|EH939892.1|EH939892
EST:     CTTCAACAAAGGAG                         GATTTCCAAGTGCTATTGGCACATCCGTAATAGCCAACAATTATG
genomic: CTTCAACAAAGGAGgtattttaat ... ttattttcagGATTTCCAAGTGCTATTGGCACATCCGTAATAGCCA-CAATTATG
EST: gi|124905191|gb|EH979271.1|EH979271
EST:     TAGCCTCTTCAACAAAGGAG                         GATTTCCAAGTGCTATTGGCACATCCGTAATAGCCACAATTATG
genomic: TAGCCTCTTCAACAAAGGAGgtattttaat ... ttattttcagGATTTCCAAGTGCTATTGGCACATCCGTAATAGCCACAATTATG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

aatattttgagttcaatccatttaaaaaatttaacttataattttttattttcagGATTTCCAAGTGCTATTGGCACATCCGTAATAGCCACAATTATG
                            atttaac  putative branch site (score: 3)
                                         ttttttattttc  putative PPT
              aatccatttaaaaaat  TA-rich tract