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gtacgtcacatggtctctacactactaagactttatagtactgatttttgaactcgttttgttttgttttcgtgatggagtatgtagtgatactttatagtactgatttttgaactcattttgtttttgttttcgtgatggagtatgtagtgatttggcttcttacttttcttaatattactttcagGTCTCCAGGGATGCTGAGAAAGCTAGGAGGATTATTGTCGAAGCACTTGACCATGTACAACCGTCAAAACCTCTCATGGAAGCACTGATTCATTTTGAGG
species | Arabidopsis thaliana |
transcript | AT1G04080.3 |
intron # | 11 |
splice site | 3' |
intron type | U2 |
EST: CCACAATACTGCCACTGCTGTATGCGCAGTATTCAAGGTTTTCATACTTG GTCTCCAGGGATGCTGAGAAAGCTAGGAGGATTATTGTCGAAGCACTTGACEST: gi|124900046|gb|EH974664.1|EH974664
genomic: CCACAATACTGCCACTGCTGTATGCGCAGTATTCAAGGTTTTCATACTTGgtacgtcaca ... ttactttcagGTCTCCAGGGATGCTGAGAAAGCTAGGAGGATTATTGTCGAAGCACTTGAC
EST: CCACAATACTGCCACTGCTGTATGCGCAGTATTCAAGGTTTTCATACTTG GTCTCCAGGGATGEST: gi|124951590|gb|EL026944.1|EL026944
genomic: CCACAATACTGCCACTGCTGTATGCGCAGTATTCAAGGTTTTCATACTTGgtacgtcaca ... ttactttcagGTCTCCAGGGATG
EST: CAATACTGCCACTGCTGTATGCGCAGTATTCAAGGTTTTCATACTTG GTCTCCAGGGATGCTGAGAAAGCTAGGAGGATTATTGTCGAAGCACT
genomic: CAATACTGCCACTGCTGTATGCGCAGTATTCAAGGTTTTCATACTTGgtacgtcaca ... ttactttcagGTCTCCAGGGATGCTGAGAAAGCTAGGAGGATTATTGTCGAAGCACT
tcgtgatggagtatgtagtgatttggcttcttacttttcttaatattactttcagGTCTCCAGGGATGCTGAGAAAGCTAGGAGGATTATTGTCGAAGCACTTGACCATGTACAACCGTCAAAACCTCTCATGGAAGCACTGATTCATTTTGAGG
ttactttc CT-rich tract
ttacttttcttaatat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtacgtcacatggtctctacactactaagactttatagtactgatttttgaactcgttttgttttgttttcgtgatggagtatgtagtgatactttatagtactgatttttgaactcattttgtttttgttttcgtgatggagtatgtagtgatttggcttcttacttttcttaatattactttcagGTCTCCAGGGATGCTGAGAAAGCTAGGAGGATTATTGTCGAAGCACTTGACCATGTACAACCGTCAAAACCTCTCATGGAAGCACTGATTCATTTTGAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CATGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAAG