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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtatgtatccattcttctaatttggcgactctatcaatgtttgagatttaagactgagatttcttctctcgcattgttagATTTGGTGTTTGGGAAGCTGCGAAATGGGTTGCAAGAGTCCGTGACAATACCTTCAATGACCCTGAACGACCGGTCTTACTCAACTTGACGACTGACATT

Basic information

species Arabidopsis thaliana
transcript AT5G66960.1
intron # 10
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT5G66960.1 (Arabidopsis thaliana), 3'ss of exon 10
lower sequence: GLYMA16G26000.1 (Glycine max), 3'ss of exon 9
----------gtatgtatccattcttctaatttggcgactctatcaat-gtttgagattta--agactgagatttcttctctcgcattgtta-------gATTTGGTGTTTGGGAAGCTGCGAAATGGGTTGCAAGAGTCCGTGACAATACCTTCAATGACCCTGAACGACCGGTCTTACTCAACTTGACGACTGACATT
           |||  ||  ||| |  | || ||   | |  |  |||     ||| | ||    ||| |     |||   |   ||| | |       ||||||| || ||||||||||| |||||||||||| |||| |||||     |  |  | |||||  | || ||  | || || |||||||| || ||  | 
agactgttacctatacattaattgtcgttatgtgaatagttaaagaatcaaacgagttataccgtactaatgaacctttgtttttattttcatgactcagATTTGGGGTATGGGAAGCTGCAAAATGGGTTGCACGAGTTCGTGATCTCTCAATTTACGACCCAAAGCGGCCAATATTGCTGAACTTGACCACAGATTTA


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

cgactctatcaatgtttgagatttaagactgagatttcttctctcgcattgttagATTTGGTGTTTGGGAAGCTGCGAAATGGGTTGCAAGAGTCCGTGACAATACCTTCAATGACCCTGAACGACCGGTCTTACTCAACTTGACGACTGACATT
                                  tttcttctctcgcatt  CT-rich tract
                  agatttaa  TA-rich tract