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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaaatatagtttcaaaatactcttaagtgtaccagtacatgtttaaatctcttcttaccgtttcattatatttcagGAAGCAGAGAAGCATCTATCTGAAATGGTTGTGTCCAAAGCCTTGATAGCAAAAATCGACAGACCATCAGGAATAATCTGCTTCCAGATTGTTAAAGACA

Basic information

species Arabidopsis thaliana
transcript AT5G64760.2
intron # 10
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT5G64760.2 (Arabidopsis thaliana), 3'ss of exon 10
lower sequence: GLYMA06G15330.1 (Glycine max), 3'ss of exon 10
-----------------gtaaatata-----gtttcaaaatactcttaagtgtaccagtacatgtttaaatctcttcttaccgtt-tcattatatttcagGAAGCAGAGAAGCATCTATCTGAAATGGTTGTGTCCAAAGCCTTGATAGCAAAAATCGACAGACCATCAGGAATAATCTGCTTCCAGATTGTTAAAGACA
                  | ||||||     ||| ||||    |   | || || |  |  || |  | |||    || |   |  |  | | |||||||||||| ||||||||||| || || ||||||||||| || || ||| | || || || || |||||    |||||| | || ||||| |  |  || || |
ttcttaatgagcaacatatgaatatatagatgttgcaaacagttaaaatgtttatcttttaatatgaagatcctaactaattctccttgtaaaatttcagGAAGCTGAGAAGCATCTTTCAGATATGGTTGTGTCTAAGGCATTGGTGGCGAAGATTGATAGACCCATGGGAATAGTTTGTTTCCAAAGAGCCAAGGATA
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|164061660|gb|ES213601.1|ES213601
EST:     TTACCTTTAAGAGACTTGCAGAACTTTTATGCCTAACCACTGAG                         GAAGCAGAGAAGCATCTATCTGAAATGGTTGTGTCCAAAGCCTTGATAGCA
genomic: TTACCTTTAAGAGACTTGCAGAACTTTTATGCCTAACCACTGAGgtaaatatag ... tatatttcagGAAGCAGAGAAGCATCTATCTGAAATGGTTGTGTCCAAAGCCTTGATAGCA
EST: gi|164203921|gb|ES173147.1|ES173147
EST:     GACTTGCAGAACTTTTATGCCTAACCACTGAG                         GAAGCAGAGAAGCATCTATCTGAAATGATTGTGTCCAAAGCCTTGATAGCA
genomic: GACTTGCAGAACTTTTATGCCTAACCACTGAGgtaaatatag ... tatatttcagGAAGCAGAGAAGCATCTATCTGAAATGGTTGTGTCCAAAGCCTTGATAGCA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

cttaagtgtaccagtacatgtttaaatctcttcttaccgtttcattatatttcagGAAGCAGAGAAGCATCTATCTGAAATGGTTGTGTCCAAAGCCTTGATAGCAAAAATCGACAGACCATCAGGAATAATCTGCTTCCAGATTGTTAAAGACA
                              ttcttac  putative branch site (score: 2)
                                       tttcatt  putative PPT
                                       tttcattatatttca  TA-rich tract