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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaaggaaacaaaaccctacatgagcttttattaattgtcagaacttaagaagtatagtcatcattttgatgtttacatttgtttacagGAAGGTGAAGTAAATGAATATCAGACAAAACTGAAAGAGGCAACATGGTCATCTCATGTCTTCCGGGTTAGTGTCACACAGAATGAGTATAACGGTGAGA

Basic information

species Arabidopsis thaliana
transcript AT5G61000.1
intron # 10
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|86084110|gb|DR379869.1|DR379869
EST:     AGAAGATTCTTGGATGTTCAGCTGATGAGCTCAACAAACTAAAATCAGAG                         GAAGGTGAAGTAAATGAATATCAGACAAAACTGAAAGAGGCAACATGGTCA
genomic: AGAAGATTCTTGGATGTTCAGCTGATGAGCTCAACAAACTAAAATCAGAGgtaaggaaac ... ttgtttacagGAAGGTGAAGTAAATGAATATCAGACAAAACTGAAAGAGGCAACATGGTCA






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

attgtcagaacttaagaagtatagtcatcattttgatgtttacatttgtttacagGAAGGTGAAGTAAATGAATATCAGACAAAACTGAAAGAGGCAACATGGTCATCTCATGTCTTCCGGGTTAGTGTCACACAGAATGAGTATAACGGTGAGA
                                            tttgttt  CT-rich tract
                                      tttacatttgttta  TA-rich tract