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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaataaacttatcaaatatacatctctagacatcgataacttctacttgaaaaacctcaagagttaattctttacagGCTGAGGGGTTCCCTACCATTCTCTTCTTCCCTGCGGGCAACAAGACTTCAGAGCCG

Basic information

species Arabidopsis thaliana
transcript AT5G60640.1
intron # 10
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|164089946|gb|ES131356.1|ES131356
EST:     TCGTCATAACCAAGATGGATGGAACAACCAATGAACATCCCAAGGCAAAG                         GCTGAGGGGTTCCCTACCATTCTCTTCTTCCCTGCGGGCAACAAGACTTC
genomic: TCGTCATAACCAAGATGGATGGAACAACCAATGAACATCCCAAGGCAAAGgtaataaact ... ttctttacagGCTGAGGGGTTCCCTACCATTCTCTTCTTCCCTGCGGGCAACAAGACTTC
EST: gi|86054026|gb|DR349783.1|DR349783
EST:     TCGTCATAACCAAGATGGATGGAACAACCAATGAACATCCCAAGGCAAAG                         GCTGAGGGGTTCCCTACCATTCTCTTCTTCCCTGCGGGCAACAAGACTTCA
genomic: TCGTCATAACCAAGATGGATGGAACAACCAATGAACATCCCAAGGCAAAGgtaataaact ... ttctttacagGCTGAGGGGTTCCCTACCATTCTCTTCTTCCCTGCGGGCAACAAGACTTCA
EST: gi|86074845|gb|DR370602.1|DR370602
EST:     TCGTCATAACCAAGATGGATGGAACAACCAATGAACATCCCAAGGCAAAG                         GCTGA-GGGTTCCCTACCATTCTCTTCTT-CCTGCGGGCAACAAGACTTCA
genomic: TCGTCATAACCAAGATGGATGGAACAACCAATGAACATCCCAAGGCAAAGgtaataaact ... ttctttacagGCTGAGGGGTTCCCTACCATTCTCTTCTTCCCTGCGGGCAACAAGACTTCA
EST: gi|86054033|gb|DR349790.1|DR349790
EST:     TCGTCATAACCAAGATGGATGGAACAACCAATGAACATCCCAAGGCAAAG                         GCTGAGGGGTTCCCTACCATTCTCTTCTTCCCTGCGG-CAACAAGACTTCA
genomic: TCGTCATAACCAAGATGGATGGAACAACCAATGAACATCCCAAGGCAAAGgtaataaact ... ttctttacagGCTGAGGGGTTCCCTACCATTCTCTTCTTCCCTGCGGGCAACAAGACTTCA
EST: gi|124948483|gb|EL024225.1|EL024225
EST:     TCGTCATAACCAAGATGGATGGAACAACCAATGAACATCCCAAGGCAAAG                         GCTGAGGGGTTCCCTACCATT
genomic: TCGTCATAACCAAGATGGATGGAACAACCAATGAACATCCCAAGGCAAAGgtaataaact ... ttctttacagGCTGAGGGGTTCCCTACCATT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tctctagacatcgataacttctacttgaaaaacctcaagagttaattctttacagGCTGAGGGGTTCCCTACCATTCTCTTCTTCCCTGCGGGCAACAAGACTTCAGAGCCG
                                             ttctttac  CT-rich tract
                                         ttaattcttta  TA-rich tract