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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtgagtttgaaattgtaatgtgttaactctgaatcttatcttttatcctgctctaaaagtagtgtttgtctagGTGCTGCGGTTGGGTTTAAATTGGACAGTTTGCCGAAACTCAGTGAAACACGGGCACGTAATAACCGAATGACTCTGATGCATTATCTATGCAAGGTAAG

Basic information

species Arabidopsis thaliana
transcript AT5G58160.1
intron # 10
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT5G58160.1 (Arabidopsis thaliana), 3'ss of exon 10
lower sequence: LOC_Os02g55150.2 (Oryza sativa), 3'ss of exon 5
-----------------------------gtgagtttgaaattgtaatgtgttaactctgaatcttatcttttatcctgctct-aaaagtagtgtttgtctagGTGCTGCGGTTGGGTTTAAATTGGACAGTTTGCCGAAACTCAGTGAAACACGGGCACGTAATAACCGAATGACTCTGATGCATTATCTATGCAAGGTAAG
                                    ||||||||  |   |  |||| |  ||  |||| || ||  |  ||| | ||  |    || |  |||  | || ||||| |||| |||||| ||  | |  ||||||| ||| |  ||||||||||||||  | |||||||| ||||||||| ||||||||     
ctattatgtcctgaaccatcatctctcttaaccacatgaaattgata---gcgaactgttgattatatccttcatatttttctcacaaacacctgtttttcagGGTCGGCTGTTGGATTTAGATTGGATAGCCTTCTTAAACTCATTGATATTCGGGCACGTAATAATAGGATGACTCTCATGCATTATTTATGCAAG-----

upper sequence: AT5G58160.1 (Arabidopsis thaliana), 3'ss of exon 10
lower sequence: GRMZM2G178996_T01 (Zea mays), 3'ss of exon 3
--------------gtgagtttgaaattgtaatgtgttaactct-----gaatct-------tatctttta--tcctgctctaaaagtagtgtttgtctagGTGCTGCGGTTGGGTTTAAATTGGACAGTTTGCCGAAACTCAGTGAAACACGGGCACGTAATAACCGAATGACTCTGATGCATTATCTATGCAAGGTAAG
               |||  ||  | | | |   ||||  ||||       || |       ||| |||||  |  |  | || | ||     || |  |||||| || ||||| |||| |||||| ||| | |  || |||||||| | ||| |||||||||||  | |||||||| ||||||||||||||||||     
caagacgtagcctcatgaaatttca-tagcagaatgttggctctttcacatatatatatatatatattttagttttttttatacatgtgtccatttttcagGTGCAGCTGTTGGATTTAGATTGGATAGTCTTCTTAAGCTCAGTGATATACGAGCACGTAATAATAGGATGACTCTCATGCATTATCTATGCAAG-----


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tgtgttaactctgaatcttatcttttatcctgctctaaaagtagtgtttgtctagGTGCTGCGGTTGGGTTTAAATTGGACAGTTTGCCGAAACTCAGTGAAACACGGGCACGTAATAACCGAATGACTCTGATGCATTATCTATGCAAGGTAAG
                                              tttgtct  CT-rich tract
             aatcttatcttttat  TA-rich tract