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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtatttttcttttcttttgtcttctcaagtttaatacaaaagctactctctttccggtttcatctcagagtttctgtttctaatccacatgtcaatttgaccagGTGGTAAAGTTTTTGGTAGAACGGAACAGTACAAGTTCTCTTCATGGTCAAGTTACTATAGGGATACTTATCTTTCAG

Basic information

species Arabidopsis thaliana
transcript AT5G51710.2
intron # 10
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT5G51710.2 (Arabidopsis thaliana), 3'ss of exon 10
lower sequence: GLYMA16G32820.1 (Glycine max), 3'ss of exon 7
gtatttttcttttcttttgtcttctcaagtttaatacaaaagctactctctttccggtttca---tctcagagtttctgtttctaatccacatgtcaatttgaccagGTGGTAAAGTTTTTGGTAGAACGGAACAGTACAAGTTCTCTTCATGGTCAAGTTACTATAGGGATACTTATCTTTCAG
    | |  |||       | | |  ||   || | || |   |  | ||  |    ||| |   | ||  ||  |  |||  | ||  |  | |   ||| |||||||||| ||||||||||| || ||||| ||||  | | ||||||||| ||||||||| || ||||  ||||| ||||||
---gtatgttttcacaccatttcccaaaacatactgcatacattgttttcagtggtttttaatagtttctaagcatgggttcattatttatttttaccttttaccagGTGGTGAAGTTTTTGGTGGAGCGGAATAGTAATAATGCTCTTCATGTTCAAGTTACAATTGGGACTCTTATTTTTCAG

upper sequence: AT5G51710.2 (Arabidopsis thaliana), 3'ss of exon 10
lower sequence: Vv16s0022g02060.t01 (Vitis vinifera), 3'ss of exon 10
gtatttttcttttcttttgtcttctcaagtttaatacaaaagctactctctttcc--ggtttcatctcagagtttctgtttctaatcca--catgtcaatttgaccagGTGGTAAAGTTTTTGGTAGAACGGAACAGTACAAGTTCTCTTCATGGTCAAGTTACTATAGGGATACTTATCTTTCAG
            |  ||| |||   ||  | | ||||   | ||| | ||||  |  |||| |  |  | |  |  |||||    | |   ||  |   ||| || |||||||||||||  ||||||||||||| | ||  | | |||||||||||||||||||||| |||| |||||| || |||
-----------gtactttttctgaacatttctgatacttca-ctattttcttctcttggttgccgcaaatatgtcatgtttacgcttcttccaattttcttttactagGTGGTAAAGTTCCTGGTAGAACGGAATACTAATAATGCTCTTCATGGTCAAGTTACTATTGGGACACTTATTTTACAG


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ctttccggtttcatctcagagtttctgtttctaatccacatgtcaatttgaccagGTGGTAAAGTTTTTGGTAGAACGGAACAGTACAAGTTCTCTTCATGGTCAAGTTACTATAGGGATACTTATCTTTCAG
                            ttctaat  putative branch site (score: 2)
                           tttctaat  TA-rich tract