Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   		10  
 5'  3'   		11  
 5'  3'   		12  
 5'  3'   		13  
 5'  3'   		14  
 5'  3'   		15  
 5'  3'   		16  
 5'  3'   		17  
 5'  3'   		18  
 5'  3'   		19  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtattcataaagatatttcagttagatttccttgtatctattgtaattcgtctggaatttagctcaaatatgctgcaccaaacttttcagATATCTCTCACATGTAATGAATGTGGCAACTCCAACAAAAACCTGCTTACAACTTGTTCATGAGTTACTTGTGCCCATCCTAATGGCTCGAAGTGAGAAG

Basic information

species Arabidopsis thaliana
transcript AT5G48310.2
intron # 10
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT5G48310.2 (Arabidopsis thaliana), 3'ss of exon 10
lower sequence: GLYMA14G00660.1 (Glycine max), 3'ss of exon 8
------------------------------------gtattcataaagatatttcagttagatttccttgtatct-attgtaattcg---tctggaatttagctcaaatatgctgcaccaaacttttc--agATATCTCTCACATGTAATGAATGTGGCAACTCCAACAAAAACCTGCTTACAACTTGTTCATGAGTTACTTGTGCCCATCCTAATGGCTCGAAGTGAGAAG
                                    | |   | ||| |  |||| | ||   ||  |  ||  | ||| |  ||     |||  | |||   |||  ||  |||        || |   |||||||| | |||||| |||||||||||||||||||| ||   |||| || | ||||     ||||| || |  ||| || ||| |||  ||||||||| |
gtatttgaatgtcatttgggtgcccccaaaaatatggaaaaaagaaacagttttctgatattctttatgttacatgatttttttttaatttcttcatttttcttcatttac-ctgtggtggttttcttgtagATATCTATTACATGTGATGAATGTGGCAACTCCAACCAAGGACTGCCTAGAGCTTGGGAGAGAGTTGCTAGAACCCCTCATAAAGGCCAGAAGTGAGAGG

upper sequence: AT5G48310.2 (Arabidopsis thaliana), 3'ss of exon 10
lower sequence: GLYMA02G47930.1 (Glycine max), 3'ss of exon 7
--------------------gtattcataaagatatttcagttaga-----tttccttgtatctattgtaattcgt--ctggaatttagctcaaatatgctgcaccaaacttttc--agATATCTCTCACATGTAATGAATGTGGCAACTCCAACAAAAACCTGCTTACAACTTGTTCATGAGTTACTTGTGCCCATCCTAATGGCTCGAAGTGAGAAG
                    ||   | |||| ||||   |   |||     ||| ||  |||   || |  | | |   |  |||||  ||| | |   |||       ||| |   |||||||| | |||||| |||||||||||||||||||| ||   |||| ||   |||||    ||||| ||||  ||| || ||| |||  ||||||||| |
gtattttgaatgtcatttgggtgcccctaaaaatatggaaaaaagaaacagttttctgatattctttatgctacatgattttaatttttctccacttacctgtggtggtcttcttgtagATATCTATTACATGTGATGAATGTGGCAACTCCAACCAAGGACTGCCTAGGGCTTGTGAGAGAGTTGCTTGAACCCCTCATAAAGGCCAGAAGTGAGAGG

upper sequence: AT5G48310.2 (Arabidopsis thaliana), 3'ss of exon 10
lower sequence: Vv12s0057g01510.t01 (Vitis vinifera), 3'ss of exon 8
gta-ttcataaagatatttcag----tta-gatttccttgtatctattgtaattcgtctggaatttagctcaaatatgctgcaccaaacttttcagATATCTCTCACATGTAATGAATGTGGCAACTCCAACAAAAACCTGCTTACAACTTGTTCATGAGTTACTTGTGCCCATCCTAATGGCTCGAAGTGAGAAG
||| || | |   |||  |||     ||| ||| |  |  |||   ||    | |   |  |  |||  ||||  |   ||        | |  |||||||| ||| |||| ||||||||||| ||||| ||||||   |||||| ||||||| ||||| || || |||||| |  ||| |||  | |||||||| 
gtagttaacatgtatacctcaagccattatgatattgtaatattcctttatgtccccttaca--ttatttcaaccactttgtgtt---ttgtgtagATATCTTTCATATGTCATGAATGTGGCCACTCCTACAAAAGATTGCTTAGAACTTGTACATGAATTGCTGGTGCCCGTTATAAAGGCAAGGAGTGAGAAA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

atctattgtaattcgtctggaatttagctcaaatatgctgcaccaaacttttcagATATCTCTCACATGTAATGAATGTGGCAACTCCAACAAAAACCTGCTTACAACTTGTTCATGAGTTACTTGTGCCCATCCTAATGGCTCGAAGTGAGAAG
                                               cttttc  CT-rich tract
     ttgtaatt  TA-rich tract