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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...tatggttttggtgaattggaataagaatatcagttgtatagcatttttttttatcttatcagaaacttacttgttgctatatgtaattaactttttacagGATCACAAAAAGCGTTTGAATCAATGGATTTTACGTTCTTTTTGTCTTCTGATGTTAGGTCTCGCACTGAACCTCTTTG

Basic information

species Arabidopsis thaliana
transcript AT5G47900.1
intron # 10
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|116435444|gb|EG478036.1|EG478036
EST:     TAACATGTCTAGTGGGTCTGCACTATGGCCATATTATCATCCACTTCAAG                         GATCACAAAAAGCGTTTGAATCAATGGATTTTACGTTCTTTTTGTCTTCTG
genomic: TAACATGTCTAGTGGGTCTGCACTATGGCCATATTATCATCCACTTCAAGgtaaacatat ... ctttttacagGATCACAAAAAGCGTTTGAATCAATGGATTTTACGTTCTTTTTGTCTTCTG
EST: gi|116435442|gb|EG478034.1|EG478034
EST:     TAACATGTCTAGTGGGTCTGCACTATGGCCATATTATCATCCACTTCAAG                         GATCACAAAAAGCGTTTGAATCAATGGATTTTACGTTCTTTTTGTCTTCTG
genomic: TAACATGTCTAGTGGGTCTGCACTATGGCCATATTATCATCCACTTCAAGgtaaacatat ... ctttttacagGATCACAAAAAGCGTTTGAATCAATGGATTTTACGTTCTTTTTGTCTTCTG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tttttttatcttatcagaaacttacttgttgctatatgtaattaactttttacagGATCACAAAAAGCGTTTGAATCAATGGATTTTACGTTCTTTTTGTCTTCTGATGTTAGGTCTCGCACTGAACCTCTTTG
                                       aattaac  putative branch site (score: 2)
                                             ctttttac  CT-rich tract
                                tatatgtaattaactt  TA-rich tract