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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtataagaaagataactagttaaagggtaaaagacagtaatgttattaaacacaagagttttcattatttgtagGTGATTCAAGGGAAATTGATGAAGAAGCAAAGGAATGGGAGCATAAGCTCTTGCAAAATAGTATGGACAAAGAGTTGTATGAACTGAACCGCCGTCTAGA

Basic information

species Arabidopsis thaliana
transcript AT5G47820.2
intron # 10
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|124742627|gb|EH833789.1|EH833789
EST:     AGTCCTCTAATTACCCCATGGTTGAAGCCACAACAG                         GTGATTCAAGGGAAATTGATGAAGAAGCAAAGGAATGGGAGCATAAGCTCT
genomic: AGTCCTCTAATTACCCCATGGTTGAAGCCACAACAGgtataagaaa ... ttatttgtagGTGATTCAAGGGAAATTGATGAAGAAGCAAAGGAATGGGAGCATAAGCTCT
EST: gi|47828927|gb|CK118611.1|CK118611
EST:     CTTGCACAGTATAGAGTCCTCTAATTACCCCATGGTTGAAGCCACAACAG                         GTGATTCAAGGGAAATTGATGAAGAAGCAAAGGAATGGGAGCATAAGCTCT
genomic: CTTGCACAGTATAGAGTCCTCTAATTACCCCATGGTTGAAGCCACAACAGgtataagaaa ... ttatttgtagGTGATTCAAGGGAAATTGATGAAGAAGCAAAGGAATGGGAGCATAAGCTCT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ttaaagggtaaaagacagtaatgttattaaacacaagagttttcattatttgtagGTGATTCAAGGGAAATTGATGAAGAAGCAAAGGAATGGGAGCATAAGCTCTTGCAAAATAGTATGGACAAAGAGTTGTATGAACTGAACCGCCGTCTAGA
                                       ttttcatt  CT-rich tract
                agtaatgttattaaa  TA-rich tract