Sequence
atgc intronic sequence ATGC exonic sequence...tgctggcatgatatcttggttcattcaaatggatggtgaatagtaattttttgtcctatttggaactttgtgatcatttcacatgttatcttattgacagAACAATCTGGAGGATTTATACAGCCTTCTACGGTTTTTGAGGATTGAACCATGGGGAACTTGGGCATG
Basic information
species | Arabidopsis thaliana |
transcript | AT5G22750.1 |
intron # | 10 |
splice site | 3' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: AT5G22750.1 (Arabidopsis thaliana), 3'ss of exon 10
lower sequence: LOC_Os02g32570.2 (Oryza sativa), 3'ss of exon 3
---------------------------------------------------------tgctggcatgata-tcttggttcattcaaatggatggtgaa----tagta-------attttttgtcctatttggaactt-tgtgatca-----tttcac--atgttatcttattgacagAACAATCTGGAGGATTTATACAGCCTTCTACGGTTTTTGAGGATTGAACCATGGGGAACTTGGGCATG
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gtgaatacaggagtagatttgactgtccatataattgaaccaatcctatttaaccctagttttcataagaatgttgcagcagataaatagaatgtgcactcctagttttcctgcatctatcagcctcttaggtgcttatgcattcaatgttttttacgagttttactctgatggcagAACAACTTGGAGGATATATACAGCCTTTTCCGGTTTTTGAGGGTTGAACCGTGGAGGAACTGGTCTTT
upper sequence: AT5G22750.1 (Arabidopsis thaliana), 3'ss of exon 10
lower sequence: GRMZM2G015190_T01 (Zea mays), 3'ss of exon 10
-----------------------------------------------------tgctggcatgatatcttggttcattcaaatggatggtgaatagtaattttttgtcc---tatttg-gaactttgtgatcat---ttcacatgt--------tatcttattgacagAACAATCTGGAGGATTTATACAGCCTTCTACGGTTTTTGAGGATTGAACCATGGGGAACTTGGGCATG----
|| | || || | || | || | | | |||||| | |||||| | ||| ||| | || |||| || | || ||| | |||||||||| |||||||||||||||||||| | |||||| ||| ||||||||||| | | ||||| |
gtgagaatatgtgtagatctatcggtctttgttagaattccctgaacatatcatgtttatccctaatgcaggattatg-gagccgacattttactcttatttttcacgcatgtatttgcgtactaggtgcttatgcattcaaatttatgaagtttactttactcacagAACAATTTGGAGGATTTATACAGCCTTTTCCGGTTTCTGAAAGTTGAACCATGGAGGAACTGGGCTTTGTAA
upper sequence: AT5G22750.1 (Arabidopsis thaliana), 3'ss of exon 10
lower sequence: Vv06s0061g01190.t01 (Vitis vinifera), 3'ss of exon 10
tgctggcatgatatcttgg--ttcattcaaatggatggtgaatagtaattttttgtcctatttggaactttgtgatcatttcacatgttatcttattgacagAACAATCTGGAGGATTTATACAGCCTTCTACGGTTTTTGAGGATTGAACCATGGGGAACTTGGGCATG
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--cctaaatagtttgaaggaatttgtactacttgcaagttacatccgatggatttttgtctttgcagctgttattccttgacatttattttttccatcacagAACAACCTGGAGGACATTTACAGCCTTCTTCGGTTTTTGAGGGTGGAACCTTGGGGAAACTGGGCATG atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.attttttgtcctatttggaactttgtgatcatttcacatgttatcttattgacagAACAATCTGGAGGATTTATACAGCCTTCTACGGTTTTTGAGGATTGAACCATGGGGAACTTGGGCATG
ttatctt CT-rich tract
ttatcttatt TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
tgctggcatgatatcttggttcattcaaatggatggtgaatagtaattttttgtcctatttggaactttgtgatcatttcacatgttatcttattgacagAACAATCTGGAGGATTTATACAGCCTTCTACGGTTTTTGAGGATTGAACCATGGGGAACTTGGGCATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAT
- - - - - - - - - - - attcaaa