1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' |
gtaataacggttacctttactctcacagtcaataatcaataacgtaaagaaatttgtttcaaggctaatttgatgtagttagagagaacaattgtttcctaattatattggtacatgcaaatgctagtgtacaatgtcggaatcttctgattttgaatttcacgttctctctgcagCGTTCAAGTTGGCATTCGAGAAGTTTCAAAAGATTCACCATTGGGACGGCTAAGAGGCAGTGACAATATAGTAA
species | Arabidopsis thaliana |
transcript | AT5G21060.3 |
intron # | 10 |
splice site | 3' |
intron type | U2 |
EST: TCATCAAAAGGGTGTGTGCTTCGTTATGTCTGTGTGATTGAGGGTTCAAG CGTTCAAGTTGGCATTCGAGAAGTTTCAAAAGATTCACCATTGGGACGGCTEST: gi|125293660|gb|EL307745.1|EL307745
genomic: TCATCAAAAGGGTGTGTGCTTCGTTATGTCTGTGTGATTGAGGGTTCAAGgtaataacgg ... ctctctgcagCGTTCAAGTTGGCATTCGAGAAGTTTCAAAAGATTCACCATTGGGACGGCT
EST: TCAAAAGGGTGTGTGCTTCGTTATGTCTGTGTGATTGAGGGTTCAAG CGTTCAAGTTGGCATTCGAGAAGTTTCAAAAGATTCACCATTGGGACGGCTEST: gi|164039234|gb|ES154011.1|ES154011
genomic: TCAAAAGGGTGTGTGCTTCGTTATGTCTGTGTGATTGAGGGTTCAAGgtaataacgg ... ctctctgcagCGTTCAAGTTGGCATTCGAGAAGTTTCAAAAGATTCACCATTGGGACGGCT
EST: CAAAAGGGTGTGTGCTTCGTTATGTCTGTGTGATTGAGGGTTCAAG CGTTCAAGTTGGCATTCGAGAAGTTTCAAAAGATTCACCATTGGGACGGCTEST: gi|86084658|gb|DR380417.1|DR380417
genomic: CAAAAGGGTGTGTGCTTCGTTATGTCTGTGTGATTGAGGGTTCAAGgtaataacgg ... ctctctgcagCGTTCAAGTTGGCATTCGAGAAGTTTCAAAAGATTCACCATTGGGACGGCT
EST: TCATCAAAAGGGTGTGTGCTTCGTTATGTCTGTGTGATTGAGGGTTCAAG CGTTCAAGTTGGCATTCGAGAAGTTTCAAAAGATTCACCATTGGGACGGCT
genomic: TCATCAAAAGGGTGTGTGCTTCGTTATGTCTGTGTGATTGAGGGTTCAAGgtaataacgg ... ctctctgcagCGTTCAAGTTGGCATTCGAGAAGTTTCAAAAGATTCACCATTGGGACGGCT
tgctagtgtacaatgtcggaatcttctgattttgaatttcacgttctctctgcagCGTTCAAGTTGGCATTCGAGAAGTTTCAAAAGATTCACCATTGGGACGGCTAAGAGGCAGTGACAATATAGTAA
ttctgat putative branch site (score: 3)
tttcacgttctctct putative PPT
attttgaattt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaataacggttacctttactctcacagtcaataatcaataacgtaaagaaatttgtttcaaggctaatttgatgtagttagagagaacaattgtttcctaattatattggtacatgcaaatgctagtgtacaatgtcggaatcttctgattttgaatttcacgttctctctgcagCGTTCAAGTTGGCATTCGAGAAGTTTCAAAAGATTCACCATTGGGACGGCTAAGAGGCAGTGACAATATAGTAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAGG