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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gttagaatctctgagcttagatgatgtgaattttttcctagcttcggtgcacgtcattgccatacctgaacgtttccttaaaattagctagctatctttctgaattgcttgttgcaatgcatttacagCATGTTGGTTGGTGGTCACCAACAATCATAAGAGGTGAAGACCGCGAGGCAATTCACATCCCAAACCATAAGTTCACAGTTAATGTCGTGAGAAACCTTA

Basic information

species Arabidopsis thaliana
transcript AT5G10490.2
intron # 10
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT5G10490.2 (Arabidopsis thaliana), 3'ss of exon 10
lower sequence: GRMZM2G028914_T02 (Zea mays), 3'ss of exon 10
----------------------gttagaatctctgagcttag--atgatgtgaattttttcctagcttcggtgcacgtcattgccatacctgaacgtttccttaaaattagctagctatctttctgaattgcttgttgc--------aatgcatttacagCATGTTGGTTGGTGGTCACCAACAATCATAAGAGGTGAAGACCGCGAGGCAATTCACATCCCAAACCATAAGTTCACAGTTAATGTCGTGAGAAACCTTA
                      | || ||   |      |||  ||||| | |  | |  | |   |  | |  |  ||  |    || | |    || || |  ||  |  | |  |    | |||||   || |  |        | |  |||| ||||||||||||| |||||| |||||| |||| |||||||  || || || || ||  |||| || ||||||||||| ||||||  | |  | || ||    |
gtatgccttaatttaactttgagctaaaactacaccatctagttatgatattatctgtaccatgcttaggttttatttctatttactatcagttttttcccatggaag-atttggtcaatactttgaatcatttctaacttaaagctattttattttcagCATGTTGGTTTGTGGTCTCCAACACTCATTAGAGGTGTTGATCGAGAAGCGATATACATTCCTAACCATAAGTTTACAGTTTCTATATTAAGGAATAACA

upper sequence: AT5G10490.2 (Arabidopsis thaliana), 3'ss of exon 10
lower sequence: GLYMA09G33170.1 (Glycine max), 3'ss of exon 10
--------------------------------gttagaatctctgagcttagatg------atgtgaattt-tttcctagcttcggtgcacgtcattgccatacctgaacgtttccttaaaattagctagctatctttctgaat-tgcttgttgcaatgcatttacagCATGTTGGTTGGTGGTCACCAACAATCATAAGAGGTGAAGACCGCGAGGCAATTCACATCCCAAACCATAAGTTCACAGTTAATGTCGTGAGAAACCTTA
                                ||  ||||  || |  ||| ||       || ||  ||| | |  || |||    |   |  |||   | |  ||      | ||| | |      ||  ||  || |||   |   ||||   |||| | | ||||||||||| ||||||||||||||||| || ||||||||||| || || ||  ||||||| |||||||| || || ||||| ||||| ||| | |||||||
gtgtgttatactgcaccttttaacctttgaatgtgggaattacttacattaaatatgtaccatatgtttttgtgtaataacttaacagatggaaattatgaaatatggtgtagtgcttgatacccttgagtcattcttttgagcattgatgttttcatgc-tatgcagCATGTTGGCTGGTGGTCACCAACAATTATTAGAGGTGAAGATCGTGAAGCTGTTCACATTCCAAACCACAAATTTACAGTGAATGTTGTGCGGAACCTTA

upper sequence: AT5G10490.2 (Arabidopsis thaliana), 3'ss of exon 10
lower sequence: GLYMA01G02840.1 (Glycine max), 3'ss of exon 10
---------gttagaatctctgagcttagatgatgtgaattttttcc--tagcttcggtgcacgtcattgccatacctgaacgtttccttaaaattagctagctatctttctgaattgcttgttgcaatgcatttacagCATGTTGGTTGGTGGTCACCAACAATCATAAGAGGTGAAGACCGCGAGGCAATTCACATCCCAAACCATAAGTTCACAGTTAATGTCGTGAGAAACCTTA
           |  |   | | |  || ||   || |||||| || |  ||  |  |    |  |  ||    ||  | | || | || |  | | |      |   |||  | |||| | |||   |||| | | ||||||||||| ||||||||||||||||| || ||||||||||| || || ||  ||||||| |||||||| || || ||||| ||||| ||| | |||||||
gtgtgttgtactgtaccttttaacttttgaatgtgggaatttcttacattaaatatgtacaatattttttgtgtaa-taatcgatacccttgagtca------ttcttttgagcattgat-gttttcatgc-tgtgcagCATGTTGGCTGGTGGTCACCAACAATTATTAGAGGTGAAGATCGTGAAGCTGTTCACATTCCAAACCACAAATTTACAGTGAATGTTGTGCGGAACCTTA

upper sequence: AT5G10490.2 (Arabidopsis thaliana), 3'ss of exon 10
lower sequence: Vv00s0313g00020.t01 (Vitis vinifera), 3'ss of exon 10
gttagaatctctgagcttagatgatgtgaattttttcctagcttcggtgcacgtcat--tgccatacctgaacgtttccttaaaattagctagctatctttctgaattgcttgttgcaatgcatttacagCATGTTGGTTGGTGGTCACCAACAATCATAAGAGGTGAAGACCGCGAGGCAATTCACATCCCAAACCATAAGTTCACAGTTAATGTCGTGAGAAACCTTA
             || | |||     |   ||   || | |  | ||   | |      ||||| |     | |  |  |||   ||  ||   |   |||   |||   |||||||        |||||||||| || |||||||||||||||||  ||||||||||||| || || ||| | ||||| |||||||| |||||||| || ||||| |||||||| || |
-------------agttaaga---aatcggttgcctctttgaattggaaaatgatgagatgcca-agtcagatgcattttta---ttgtctgaat---tttgataatcttttgttgc-------ctacagCATGTGGGATGGTGGTCACCAACAATAGTAAGAGGTGAAGATCGTGAAGCAGTCCACATTCCAAACCACAAGTTCACTGTGAATGTTGTGAGAAATCTCA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ttccttaaaattagctagctatctttctgaattgcttgttgcaatgcatttacagCATGTTGGTTGGTGGTCACCAACAATCATAAGAGGTGAAGACCGCGAGGCAATTCACATCCCAAACCATAAGTTCACAGTTAATGTCGTGAGAAACCTTA
     taaaatta  TA-rich tract