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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaagtattgttaagaccatcttacacttttgtgtggtttgttaaagcatgtcaatatggttaagtggtgatgggttctcttgcagGTCACTTCAAGGAAACAAGTTGACTGGCAGAATTCCGGAAGTGATTGGTCTGATGCAGGCTCTTGCTGTATT

Basic information

species Arabidopsis thaliana
transcript AT5G07180.1
intron # 10
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT5G07180.1 (Arabidopsis thaliana), 3'ss of exon 10
lower sequence: LOC_Os06g03970.1 (Oryza sativa), 3'ss of exon 9
--------------------------------gtaagta--ttgttaagaccatcttacacttttgtgtggtttgttaaagcatgtcaatatggttaagtggtgatgggttctcttgcagGTCACTTCAAGGAAACAAGTTGACTGGCAGAATTCCGGAAGTGATTGGTCTGATGCAGGCTCTTGCTGTATT
                                  | |||   || |    |  |||||  | | |   || |||  | |     | |  |||| | ||    |  |        |   ||||||||||||||||| |   ||||||| | |||||| || |||||||| |||||||| |||||||||||  |
gtaagtgttcctgagttattgcaaatcctctaacatgtaatctgctgtttcactcttatgcatatagatgctttacttaca---gcctttatgttgaaccatttctattcatgttcatagGTCACTTCAAGGAAATAGACTGACTGGGAAAATTCCAGATGTGATTGGCCTGATGCAAGCTCTTGCTGTTCT

upper sequence: AT5G07180.1 (Arabidopsis thaliana), 3'ss of exon 10
lower sequence: GRMZM2G082855_T03 (Zea mays), 3'ss of exon 9
-------------------gtaagtattgttaagaccatcttacacttttgtgtggtttgttaaagcatgtcaatatgg---ttaagtggtgatgggttctcttgcagGTCACTTCAAGGAAACAAGTTGACTGGCAGAATTCCGGAAGTGATTGGTCTGATGCAGGCTCTTGCTGTATT
                     || | || || |   || |  | |||| |||     |   |  | |||| |  | |     || |    ||    ||| | || |||||||||||||||||| |   ||| ||||| |||||| ||||||||||| || |||||||||||||||||  |
gtaagtcttcctgatgtcttgaattcttctttaattcagc--agacttgtgtactcatatatgtaccatgccgttctttgttttgatcattgcattgttgttttacagGTCACTTCAAGGAAATAGACTGATTGGCAAAATTCCTGAAGTGATTGGCCTCATGCAGGCTCTTGCTGTCCT
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|309381098|gb|HO850319.1|HO850319
EST:     ATTACCGGAGTTATACCCTACAATATTGGTTTCCTCCAAGTAGCTACTCT                         GTCACTTCAAGGAAACAAGTTGACTGGC
genomic: ATTACCGGAGTTATACCCTACAATATTGGTTTCCTCCAAGTAGCTACTCTgtaagtattg ... tctcttgcagGTCACTTCAAGGAAACAAGTTGACTGGC






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gtgtggtttgttaaagcatgtcaatatggttaagtggtgatgggttctcttgcagGTCACTTCAAGGAAACAAGTTGACTGGCAGAATTCCGGAAGTGATTGGTCTGATGCAGGCTCTTGCTGTATT
                                            ttctcttgc  CT-rich tract
      tttgttaaa  TA-rich tract