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...tggatccatttcatctaaaaccgagttaatcatagtgtgcaagtgatgtatctggcattagttaaggagcggtctaatgatattgttgttgtttatgcagGTGCTCTGACCGGAGCAGTCACCACTCCGCTTGATGTTATTAAGACAAGATTAATGGTTCAG
species | Arabidopsis thaliana |
transcript | AT4G39460.2 |
intron # | 10 |
splice site | 3' |
intron type | U2 |
EST: GCGTAGAGAGCTTAGTGATCCTGAGAACGCTCTAATCGGTGCATTTGCTG GTGCTCTGACCGGAGCAGTCACCACTCCGCTTGAEST: gi|125212681|gb|EL227635.1|EL227635
genomic: GCGTAGAGAGCTTAGTGATCCTGAGAACGCTCTAATCGGTGCATTTGCTGgttggtgaca ... gtttatgcagGTGCTCTGACCGGAGCAGTCACCACTCCGCTTGA
EST: GCGTAGAGAGCTTAGTGATCCTGAGAACGCTCTAATCGGTGCATTTGCTG GTGCTCTGACCGGAGCAGTCACCACTCCGEST: gi|86082868|gb|DR378627.1|DR378627
genomic: GCGTAGAGAGCTTAGTGATCCTGAGAACGCTCTAATCGGTGCATTTGCTGgttggtgaca ... gtttatgcagGTGCTCTGACCGGAGCAGTCACCACTCCG
EST: GCGTAGAGAGCTTAGTGATCCTGAGAACGCTCTAATCGGTGCATTTGCTG GTGCTCTGACCGGAGCAGTCACCACTCCGCTTGATGTTATTAAGACAAGATEST: gi|124727293|gb|EH818695.1|EH818695
genomic: GCGTAGAGAGCTTAGTGATCCTGAGAACGCTCTAATCGGTGCATTTGCTGgttggtgaca ... gtttatgcagGTGCTCTGACCGGAGCAGTCACCACTCCGCTTGATGTTATTAAGACAAGAT
EST: GCGTAGAGAGCTTAGTGATCCTGAGAACGCTCTAATCGGTGCATTTGCTG GTGCTCTGACCGGAGCAGTC
genomic: GCGTAGAGAGCTTAGTGATCCTGAGAACGCTCTAATCGGTGCATTTGCTGgttggtgaca ... gtttatgcagGTGCTCTGACCGGAGCAGTC
atgtatctggcattagttaaggagcggtctaatgatattgttgttgtttatgcagGTGCTCTGACCGGAGCAGTCACCACTCCGCTTGATGTTATTAAGACAAGATTAATGGTTCAG
gtctaat putative branch site (score: 3)
taatgatatt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tggatccatttcatctaaaaccgagttaatcatagtgtgcaagtgatgtatctggcattagttaaggagcggtctaatgatattgttgttgtttatgcagGTGCTCTGACCGGAGCAGTCACCACTCCGCTTGATGTTATTAAGACAAGATTAATGGTTCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGCAG