Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   		10  
 5'  3'   		11  
 5'  3'   		12  
 5'  3'   		13  
 5'  3'   		14  
 5'  3'   		15  
 5'  3'   		16  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaatatttttactgcataaacagtttttctgctatgaatcagacagaataagacgttgaatatcttgatatattccttagGTTGGTACATCATTAGGAGCAAGAAGAGGATTACTTCTTCGTGGTGGTGATATTCTTGAAAAGTTTTCCTTGGTTGATACTGTTGTCTTCGACAAAACTG

Basic information

species Arabidopsis thaliana
transcript AT4G33520.2
intron # 10
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT4G33520.3 (Arabidopsis thaliana), 3'ss of exon 10
lower sequence: GLYMA08G07710.1 (Glycine max), 3'ss of exon 10
gtaatattttt------actgcataaacagtttttctgctatgaatcagacagaa-taagacgttgaatatcttgatatattccttagGTTGGTACATCATTAGGAGCAAGAAGAGGATTACTTCTTCGTGGTGGTGATATTCTTGAAAAGTTTTCCTTGGTTGATACTGTTGTCTTCGACAAAACTG
|||| |||||       ||  |||  |   |   |  | ||| | |  |   ||| |||| | |    ||   |  | | ||    ||||||| ||||| || ||||| |  |||||||||||||||||||||||  | ||||| || |||||| || |||| || |||||||| || |||||||| |
gtaacattttcatggagaccacatttattatcacttagttatcattatgtttgaactaagccatgttgtacacttttgtgtttaaaagGTTGGAACATCTTTGGGAGCTAAGAGAGGATTACTTCTTCGTGGTGGAAACATTCTAGAGAAGTTTGCCATGGTAGACACTGTTGTGTTTGACAAAACAG


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tttctgctatgaatcagacagaataagacgttgaatatcttgatatattccttagGTTGGTACATCATTAGGAGCAAGAAGAGGATTACTTCTTCGTGGTGGTGATATTCTTGAAAAGTTTTCCTTGGTTGATACTGTTGTCTTCGACAAAACTG
                                     tcttgat  putative branch site (score: 4)
                                             tattcctt  CT-rich tract
                                 aatatcttgatatatt  TA-rich tract