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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtactgaaactctcttcttatacatcccaacctcttttaacatgtttataaactttctgatatgttttgctttgttttgtgtgtgtgaacagGGTTCTTGAAGGTTTACATGCATCATTTGTGGAGATAGTACCATACAAGTCGATTGTTATGTTCACACTCTTCCAGCTTCTATATTTTCTGATATGCTAT

Basic information

species Arabidopsis thaliana
transcript AT4G32510.1
intron # 10
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|86059581|gb|DR355338.1|DR355338
EST:     TTCTGGGAAAGACTTCAGTTACTATTCATCACTCCTGGACGTCGATTCAN                         GGTTCTTGAAGGTTTACATGCATCATTTGTGGAGATAGTACCATACAAGTC
genomic: TTCTGGGAAAGACTTCAGTTACTATTCATCACTCCTGGACGTCGATTCAAgtactgaaac ... gtgtgaacagGGTTCTTGAAGGTTTACATGCATCATTTGTGGAGATAGTACCATACAAGTC






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

taacatgtttataaactttctgatatgttttgctttgttttgtgtgtgtgaacagGGTTCTTGAAGGTTTACATGCATCATTTGTGGAGATAGTACCATACAAGTCGATTGTTATGTTCACACTCTTCCAGCTTCTATATTTTCTGATATGCTAT
     tgtttataaacttt  TA-rich tract