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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtacttttcaaatccttttgtttcgttaactacattcataacatattgataaacccaccctggtatggataaatgaaacattggcactaaagcgttccaatcatgaggacagtgaaatacattccacgaagagatgaccgtacttttctattaggtctgatgtcttggattttccatgttctctgcagTAACATTCAGCCGTACAGAACCTGAAGGAAAACTCGTAATGGGATACCGTAAAGCGACGAACTCTACAGCGACACAG

Basic information

species Arabidopsis thaliana
transcript AT4G32010.1
intron # 10
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT4G32010.1 (Arabidopsis thaliana), 3'ss of exon 10
lower sequence: Vv08s0058g01300.t01 (Vitis vinifera), 3'ss of exon 7
gtacttttcaaatccttttgtttcgttaactacattcataacatattgataaacccaccctggtatggataaatgaaacattggcactaaagcgttccaatcatgaggacagtgaaatacattccacgaagagatgaccgtacttttctattaggtctgatgtcttggattttccatgttctctgcagTAACATTCAGCCGTACAGAACCTGAAGGAAAACTCGTAATGGGATACCGTAAAGCGACGAACTCTACAGCGACACAG
                                                                                || |   |      ||||  |  ||    |  |    | | || |  ||||  | ||   ||| |||    |   ||   | |  |  ||||   || ||  |||||||||||||||||||||  || || ||||||||||| || ||||| | ||| |||||  | |||||     | |  |||
-------------------------------------------------------------------------------cttcgtttttctttcttccttttctgtttcctttt---ttcttttccagaagctaaga---tacatttggtat---tccatttttatccatttaatatttttgctgcagTAACATTCAGCCGTATGGATCCAGAAGGAAAACTTGTTATGGGGTTCCGGAAAGCATCTAACTCCGTTTCCATGCAG
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|116471406|gb|EG513998.1|EG513998
EST:     GGGTGTGACTCCTTGCATACAGTCCATGCAGTTGCAAGCTGGTGACACTG                         TAACATTCAGCCGTACAGAACCTGAAGGAAAACTCGTAATGGGATACCGTA
genomic: GGGTGTGACTCCTTGCATACAGTCCATGCAGTTGCAAGCTGGTGACACTGgtacttttca ... ttctctgcagTAACATTCAGCCGTACAGAACCTGAAGGAAAACTCGTAATGGGATACCGTA






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

atgaccgtacttttctattaggtctgatgtcttggattttccatgttctctgcagTAACATTCAGCCGTACAGAACCTGAAGGAAAACTCGTAATGGGATACCGTAAAGCGACGAACTCTACAGCGACACAG
                     gtctgat  putative branch site (score: 4)
                                    ttttccatgttctct  putative PPT
          ttttctatta  TA-rich tract