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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaaaacacccgagctttcttctcattatcatggttcttggaatttctgttactgatccataaccatcctctatgcagAAAGTGACGACAGTAAAGCCGTGTCTATGGAAAGGAGAGCAACGTCCATGTTACCTATTTGCTCGGAAGTTTAATCCTGAAACTCTAGACCGATTGATGT

Basic information

species Arabidopsis thaliana
transcript AT4G31350.2
intron # 10
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|164124114|gb|EL988831.1|EL988831
EST:     CTTGCTTACCATGTCACAAGCGATTTAAAG                         AAAGTGACGACAGTAAAGCCGTGTCTATGGAAAGGAGAGCAACGTCCATGT
genomic: CTTGCTTACCATGTCACAAGCGATTTAAAGgtaaaacacc ... ctctatgcagAAAGTGACGACAGTAAAGCCGTGTCTATGGAAAGGAGAGCAACGTCCATGT






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

cattatcatggttcttggaatttctgttactgatccataaccatcctctatgcagAAAGTGACGACAGTAAAGCCGTGTCTATGGAAAGGAGAGCAACGTCCATGTTACCTATTTGCTCGGAAGTTTAATCCTGAAACTCTAGACCGATTGATGT
                                        ccatcctct  CT-rich tract
                  aatttct  TA-rich tract