Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   		10  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaaattactaactggactagctcggttccttttacttgcttatctgagttgttctctaagcagagcattgctacatatatgttgacagGTACGGTGCGCCTCTACACGGTGGATTTGGAGTGGGGCTGGAGCGAGTGGTCATGCTTTTCTGTGCACTGAACAACATTCGGAAAACATCCCTCTTCCCT

Basic information

species Arabidopsis thaliana
transcript AT4G31180.1
intron # 10
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT4G31180.2 (Arabidopsis thaliana), 3'ss of exon 10
lower sequence: Vv04s0008g03010.t01 (Vitis vinifera), 3'ss of exon 9
------gtaaattactaactggactagc-tcggttccttttac-ttgcttatctgagttgtt-ctctaagcagagcattgctacatatatgttg--acagGTACGGTGCGCCTCTACACGGTGGATTTGGAGTGGGGCTGGAGCGAGTGGTCATGCTTTTCTGTGCACTGAACAACATTCGGAAAACATCCCTCTTCCCT
      |    |||  |  ||   || | |   |    |  |   ||||    | |  |     | | |  | |    ||  |  |    | |    |||||| ||||| |||| ||| ||||| |||||||||||  ||||||||||||| ||||| |||||||| || || || ||||| ||||| || || ||||| 
ttgattgcccgttatcacttgtgttaaccttaataaactccatgctgctacaataacctaagattttcaatataatcatgtgatgttcgggctactgcagGTATGGTGCACCTCCACATGGTGGGTTTGGAGTGGGTTTGGAGCGAGTGGTGATGCTCTTCTGTGCTCTTAATAATATTCGCAAAACTTCACTTTTCCCC
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|86087262|gb|DR383021.1|DR383021
EST:     GAATGTGGCATTGATGTCAAGACAATATCCACATACATTGATTCATTCAG                         GTACGGTGCGCCTCTACACGGTGGATTTGGAGTGGGGCTGGAGCGAGTGGT
genomic: GAATGTGGCATTGATGTCAAGACAATATCCACATACATTGATTCATTCAGgtaaattact ... atgttgacagGTACGGTGCGCCTCTACACGGTGGATTTGGAGTGGGGCTGGAGCGAGTGGT






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

acttgcttatctgagttgttctctaagcagagcattgctacatatatgttgacagGTACGGTGCGCCTCTACACGGTGGATTTGGAGTGGGGCTGGAGCGAGTGGTCATGCTTTTCTGTGCACTGAACAACATTCGGAAAACATCCCTCTTCCCT
                                      tacatatat  TA-rich tract