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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtatattcacttcgttttgatatttagaactttctgatccatcgccgtacctccctaaggtttcactaattactttattttctgttcaacagGCCTCATGACCGAGTGCCTCTGAAAGATATGAAGGCTGACTGGCATGCATGCCTTGACAATCCTGTTGGATTCAAG

Basic information

species Arabidopsis thaliana
transcript AT4G26970.1
intron # 10
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|124764163|gb|EH854293.1|EH854293
EST:     TTTCTGGTCCTAAAAG                         GCCTCATGACCGAGTGCCTCTGAAAGATATGAAGGCTGACTGGCATGCATG
genomic: TTTCTGGTCCTAAAAGgtatattcac ... tgttcaacagGCCTCATGACCGAGTGCCTCTGAAAGATATGAAGGCTGACTGGCATGCATG






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tccatcgccgtacctccctaaggtttcactaattactttattttctgttcaacagGCCTCATGACCGAGTGCCTCTGAAAGATATGAAGGCTGACTGGCATGCATGCCTTGACAATCCTGTTGGATTCAAG
                          cactaat  putative branch site (score: 2)
                                   ctttattttctgttc  putative PPT
                       tttcactaattacttt  TA-rich tract