1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' |
gtgagtatatattgcatgctcattacaaaaaacaatgaaaagtgtattaatattgaaaacattcatatatttctaaattcttcagctgactataaattctttcttctctttttcgattttgcagTATTTCCCGGAAAACTTGAGGTGGTGAATTCGGTGGAGTAAAAAAGTGCCCATGGAGGATTAGTCGTTTTATTTACTTACAAATATTTTTACACATTTTC
species | Arabidopsis thaliana |
transcript | AT4G26260.2 |
intron # | 10 |
splice site | 3' |
intron type | U2 |
EST: ACGTTGATGTGGAGAAGGTCAAGCCTTACTACATGTCTCTTATCAAGAAA TATTTCCCGGAAAACTTGAGGGGGTGAATTCGGTGGAGTAAAAAEST: gi|116471598|gb|EG514190.1|EG514190
genomic: ACGTTGATGTGGAGAAGGTCAAGCCTTACTACATGTCTCTTATCAAGAAAgtgagtatat ... gattttgcagTATTTCCCGGAAAACTTGAGGTGGTGAATTCGGTGGAGTAAAAA
EST: ACGTTGATGTGGAGAAGGTCAAGCCTTACTACATGTCTCTTATCAAGAAA TATTTCCCGGAAAACTTGAGGTGGTGAATTCGGTGGAGTAAAAAAGTGCCCEST: gi|116471597|gb|EG514189.1|EG514189
genomic: ACGTTGATGTGGAGAAGGTCAAGCCTTACTACATGTCTCTTATCAAGAAAgtgagtatat ... gattttgcagTATTTCCCGGAAAACTTGAGGTGGTGAATTCGGTGGAGTAAAAAAGTGCCC
EST: ACGTTGATGTGGAGAAGGTCAAGCCTTACTACATGTCTCTTATCAAGAAA TATTTCCCGGAAAACTTGAGGTGGTGAATTCGGTGGAGTAAAAAAGTGCCC
genomic: ACGTTGATGTGGAGAAGGTCAAGCCTTACTACATGTCTCTTATCAAGAAAgtgagtatat ... gattttgcagTATTTCCCGGAAAACTTGAGGTGGTGAATTCGGTGGAGTAAAAAAGTGCCC
tttctaaattcttcagctgactataaattctttcttctctttttcgattttgcagTATTTCCCGGAAAACTTGAGGTGGTGAATTCGGTGGAGTAAAAAAGTGCCCATGGAGGATTAGTCGTTTTATTTACTTACAAATATTTTTACACATTTTC
ttctttcttctctttt CT-rich tract
tataaattctttctt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtgagtatatattgcatgctcattacaaaaaacaatgaaaagtgtattaatattgaaaacattcatatatttctaaattcttcagctgactataaattctttcttctctttttcgattttgcagTATTTCCCGGAAAACTTGAGGTGGTGAATTCGGTGGAGTAAAAAAGTGCCCATGGAGGATTAGTCGTTTTATTTACTTACAAATATTTTTACACATTTTC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CATGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAT