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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gttggtcaagtgttgatattttgagtttgggtggagtgttatggtagtttgtaaaataatggtgatgcctgtattgcagAATTTAATAATGCAACATGTGGACCACTCAGCCGGGGAGTTAATAAATATGGTGCAAGGACTTCTGCGATTTGATCCGTCAGAGAGAATAACCGCTCGTG

Basic information

species Arabidopsis thaliana
transcript AT4G24740.2
intron # 10
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|164053021|gb|EL991468.1|EL991468
EST:     CAACCTCAAGAGATAGCCTGAAGGCAGTATTGAAGCTTCCTCGGCTTCAG                         AATTTAATAATGCAACATGTGGACCACTCAGCCGGGGAG
genomic: CAACCTCAAGAGATAGCCTGAAGGCAGTATTGAAGCTTCCTCGGCTTCAGgttggtcaag ... tgtattgcagAATTTAATAATGCAACATGTGGACCACTCAGCCGGGGAG
EST: gi|86086900|gb|DR382659.1|DR382659
EST:     CAACCTCAAGAGATAGCCTGAAGGCAGTATTGAAGCTTCCTCGGCTTCAG                         AATTTAATAATGCAACATGTGGACCACTCAGCCGGGGAGTTAATAAATATG
genomic: CAACCTCAAGAGATAGCCTGAAGGCAGTATTGAAGCTTCCTCGGCTTCAGgttggtcaag ... tgtattgcagAATTTAATAATGCAACATGTGGACCACTCAGCCGGGGAGTTAATAAATATG
EST: gi|164101169|gb|ES186812.1|ES186812
EST:     CAACCTCAAGAGATAGCCTGAAGGCAGTATTGAAGCTTCCTCGGCTTCAG                         AATTTAATAATGCAACATGTAGGACCACTCAGCCGGGGAG
genomic: CAACCTCAAGAGATAGCCTGAAGGCAGTATTGAAGCTTCCTCGGCTTCAGgttggtcaag ... tgtattgcagAATTTAATAATGCAACATGT-GGACCACTCAGCCGGGGAG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gtttgggtggagtgttatggtagtttgtaaaataatggtgatgcctgtattgcagAATTTAATAATGCAACATGTGGACCACTCAGCCGGGGAGTTAATAAATATGGTGCAAGGACTTCTGCGATTTGATCCGTCAGAGAGAATAACCGCTCGTG
                    tagtttgtaaaataat  TA-rich tract