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gtaaaataccatccaaactctggagaatgtcctaattgaacaaaaccgaaattgttttgtaaagtaaccatatctctctatctttctttgttaatttagCCGGAACCAGAGTTCAGGCCTCCAATGTCAGAGGTGGTGCAACAGCTAGTAAGATTAGTTCAAAGGGCAAGTGTTGTCAAACGAAGATCAAGTGATGACA
species | Arabidopsis thaliana |
transcript | AT4G22130.2 |
intron # | 10 |
splice site | 3' |
intron type | U2 |
EST: CAGCTAAGTCACTGTCTCGTTTTGCGGACATCATTGCTCTCTGTATTCAG CCGGAACCAGAGTTCAGGCCTCCAATGTCAGAGGTGGTGCAACAGCTAGTAEST: gi|86077335|gb|DR373092.1|DR373092
genomic: CAGCTAAGTCACTGTCTCGTTTTGCGGACATCATTGCTCTCTGTATTCAGgtaaaatacc ... gttaatttagCCGGAACCAGAGTTCAGGCCTCCAATGTCAGAGGTGGTGCAACAGCTAGTA
EST: CAGCTAAGTCACTGTCTCGTTTTGCGGACATCATTGCTCTCTGTATTCAG CCGGAWCCAGAGTTCAGGCCTCCAATGTCAGAGGTGGTGCAACAGCTAGTAEST: gi|163999808|gb|ES004479.1|ES004479
genomic: CAGCTAAGTCACTGTCTCGTTTTGCGGACATCATTGCTCTCTGTATTCAGgtaaaatacc ... gttaatttagCCGGAACCAGAGTTCAGGCCTCCAATGTCAGAGGTGGTGCAACAGCTAGTA
EST: GTCACTGTCTCGTTTTGCGGACATCATTGCTCTCTGTATTCAG CCGGAACCAGAGTTCAGGCCTCCAATGTCAGAGGTGGTGCAACAGCTAGTAEST: gi|116380253|gb|EG422845.1|EG422845
genomic: GTCACTGTCTCGTTTTGCGGACATCATTGCTCTCTGTATTCAGgtaaaatacc ... gttaatttagCCGGAACCAGAGTTCAGGCCTCCAATGTCAGAGGTGGTGCAACAGCTAGTA
EST: CAGCTAAGTCACTGTCTCGTTTTGCGGACATCATTGCTCTCTGTATTCAG CCGGAACCAGAGTTCAGGCCTCCAATGTCAGAGGTGGTGCAACAGCTAGTA
genomic: CAGCTAAGTCACTGTCTCGTTTTGCGGACATCATTGCTCTCTGTATTCAGgtaaaatacc ... gttaatttagCCGGAACCAGAGTTCAGGCCTCCAATGTCAGAGGTGGTGCAACAGCTAGTA
accgaaattgttttgtaaagtaaccatatctctctatctttctttgttaatttagCCGGAACCAGAGTTCAGGCCTCCAATGTCAGAGGTGGTGCAACAGCTAGTAAGATTAGTTCAAAGGGCAAGTGTTGTCAAACGAAGATCAAGTGATGACA
tatctctctatctttc CT-rich tract
tttctttgttaattta TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaaaataccatccaaactctggagaatgtcctaattgaacaaaaccgaaattgttttgtaaagtaaccatatctctctatctttctttgttaatttagCCGGAACCAGAGTTCAGGCCTCCAATGTCAGAGGTGGTGCAACAGCTAGTAAGATTAGTTCAAAGGGCAAGTGTTGTCAAACGAAGATCAAGTGATGACA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGATCA