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gtaagtaaaatcacttttgtctttcattttcgatatacttttgtgggtagattaattatagttctgttactttaaatcatagGTACGCTTACCTTTCTCGTCTTTAAGACCTGTATTTCGCGCACGTACAGTTACAGATGCACCACCTTTTAATGCAAGCAGTATCATTTCACTACAG
species | Arabidopsis thaliana |
transcript | AT4G18810.1 |
intron # | 10 |
splice site | 3' |
intron type | U2 |
EST: CTGTTGGTTACACCGCCAGTTTTGACACTTCACCAGGCCAATGGCAATCT GTACGCTTACCTTTCTCGTCTTTAAGACCTGTATTTCGCGCACGTACEST: gi|116378718|gb|EG421310.1|EG421310
genomic: CTGTTGGTTACACCGCCAGTTTTGACACTTCACCAGGCCAATGGCAATCTgtaagtaaaa ... taaatcatagGTACGCTTACCTTTCTCGTCTTTAAGACCTGTATTTCGCGCACGTAC
EST: CTGTTGGTTACACCGCCAGTTTTGACACTTCACCAGGCCAATGGCAATCT GTACGCTTACCTTTCTCGTCTTTAAGACCEST: gi|124775655|gb|EH865784.1|EH865784
genomic: CTGTTGGTTACACCGCCAGTTTTGACACTTCACCAGGCCAATGGCAATCTgtaagtaaaa ... taaatcatagGTACGCTTACCTTTCTCGTCTTTAAGACC
EST: ACCAGGCCAATGGCAATCT GTACGCTTACCTTTCTCGTCTTTAAGACCTGTATTTCGCGCACGTACAGTTEST: gi|125187777|gb|EL202731.1|EL202731
genomic: ACCAGGCCAATGGCAATCTgtaagtaaaa ... taaatcatagGTACGCTTACCTTTCTCGTCTTTAAGACCTGTATTTCGCGCACGTACAGTT
EST: CTGTTGGTTACACCGCCAGTTTTGACACTTCACCAGGCCAATGGCAATCT GTACGCTTACCTTTCTCGTCTTTAAGACCTGTA
genomic: CTGTTGGTTACACCGCCAGTTTTGACACTTCACCAGGCCAATGGCAATCTgtaagtaaaa ... taaatcatagGTACGCTTACCTTTCTCGTCTTTAAGACCTGTA
tttcgatatacttttgtgggtagattaattatagttctgttactttaaatcatagGTACGCTTACCTTTCTCGTCTTTAAGACCTGTATTTCGCGCACGTACAGTTACAGATGCACCACCTTTTAATGCAAGCAGTATCATTTCACTACAG
gattaat putative branch site (score: 3)
ttacttt putative PPT
attaattatagttctg TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaagtaaaatcacttttgtctttcattttcgatatacttttgtgggtagattaattatagttctgttactttaaatcatagGTACGCTTACCTTTCTCGTCTTTAAGACCTGTATTTCGCGCACGTACAGTTACAGATGCACCACCTTTTAATGCAAGCAGTATCATTTCACTACAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGATG