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gtgagttttcaagtttaaatgtctttttcttcgtcctgctacaactacaaactaatgatcttgtctcaatataattcccgagttaatgataaagttggtttttttttttgggcatgtagCTGAGGATTGGTTAAACCCTGATGTTGTACTGGAAGCTTTCGAAGCTAGGGCTCTCAGAATGGCTGTTACGTGTGCCAAAAATCTCAGCAAGTTTGAGAA
species | Arabidopsis thaliana |
transcript | AT4G16760.2 |
intron # | 10 |
splice site | 3' |
intron type | U2 |
EST: TGGTGTTCAAAAGG CTGAGGATTGGTTAAACCCTGATGTTGTACTGGAAGCTTTCGAAGCTAGGGEST: gi|116448274|gb|EG490866.1|EG490866
genomic: TGGTGTTCAAAAGGgtgagttttc ... gggcatgtagCTGAGGATTGGTTAAACCCTGATGTTGTACTGGAAGCTTTCGAAGCTAGGG
EST: TATGGGCCGGGCAGCACATCTTTTGCAATGTCGTTCTGGTGTTCAAAAGG CTGAGGATTGGTTAAACCCTGATGTTGTACTGGAAGCTTTCGAAGCTAGGGEST: gi|116441440|gb|EG484032.1|EG484032
genomic: TATGGGCCGGGCAGCACATCTTTTGCAATGTCGTTCTGGTGTTCAAAAGGgtgagttttc ... gggcatgtagCTGAGGATTGGTTAAACCCTGATGTTGTACTGGAAGCTTTCGAAGCTAGGG
EST: TATGGGCCGGGCAGCACATCTTTTGCAATGTCGTTCTGGTGTTCAAAAGG CTGAGGATTGGTTAAACCCTGATGTTGTACTGGAAGCTTTCGAAGCTAGGGEST: gi|116448277|gb|EG490869.1|EG490869
genomic: TATGGGCCGGGCAGCACATCTTTTGCAATGTCGTTCTGGTGTTCAAAAGGgtgagttttc ... gggcatgtagCTGAGGATTGGTTAAACCCTGATGTTGTACTGGAAGCTTTCGAAGCTAGGG
EST: TATGGGCCGGGCAGCACATCTTTTGCAATGTCGTTCTGGTGTTCAAAAGG CTGAGGATTGGTTAAACCCTGATGTTGTACTGGAAGCTTTCGAAGCTAGGGEST: gi|301501186|gb|HO206726.1|HO206726
genomic: TATGGGCCGGGCAGCACATCTTTTGCAATGTCGTTCTGGTGTTCAAAAGGgtgagttttc ... gggcatgtagCTGAGGATTGGTTAAACCCTGATGTTGTACTGGAAGCTTTCGAAGCTAGGG
EST: TATGGGCCGGGCAGCACATCTTTTGCAATGTCGTTCTGGTGTTCAAAAGG CTGAGGATTGGTTAAACCCTGATGTTGTACTGGAAGCTTTCGAAGCTAGGGEST: gi|116479261|gb|EG521853.1|EG521853
genomic: TATGGGCCGGGCAGCACATCTTTTGCAATGTCGTTCTGGTGTTCAAAAGGgtgagttttc ... gggcatgtagCTGAGGATTGGTTAAACCCTGATGTTGTACTGGAAGCTTTCGAAGCTAGGG
EST: TATGGGCCGGGCAGCACATCTTTTGCAATGTCGTTCTGGTGTTCAAAAGG CTGAGGATTGGTTAAACCCTGATGTTGTACTGGAAGCTTTCGAAGCTAGGG
genomic: TATGGGCCGGGCAGCACATCTTTTGCAATGTCGTTCTGGTGTTCAAAAGGgtgagttttc ... gggcatgtagCTGAGGATTGGTTAAACCCTGATGTTGTACTGGAAGCTTTCGAAGCTAGGG
ctcaatataattcccgagttaatgataaagttggtttttttttttgggcatgtagCTGAGGATTGGTTAAACCCTGATGTTGTACTGGAAGCTTTCGAAGCTAGGGCTCTCAGAATGGCTGTTACGTGTGCCAAAAATCTCAGCAAGTTTGAGAA
agttaat putative branch site (score: 4)
tttttttttttg putative PPT
ttaatgataaagttgg TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtgagttttcaagtttaaatgtctttttcttcgtcctgctacaactacaaactaatgatcttgtctcaatataattcccgagttaatgataaagttggtttttttttttgggcatgtagCTGAGGATTGGTTAAACCCTGATGTTGTACTGGAAGCTTTCGAAGCTAGGGCTCTCAGAATGGCTGTTACGTGTGCCAAAAATCTCAGCAAGTTTGAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGTT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCAAG