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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaaggcaaaaatatttatatccatatttatatatcttctcgtttgaattcttgcactttgctggatttgtagtttaaaagtccatgtttacttatttgcagGTGTGGGATATTCGTACCAAGATGCAAATTTTTGCACTCTCAGGACATGACAACACCGTTTGTTCTGTATTTACTCGTCCAACA

Basic information

species Arabidopsis thaliana
transcript AT4G15900.1
intron # 10
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|116453833|gb|EG496425.1|EG496425
EST:     CCCAACTTTGGATGTTTTATTAACTNNNNNNNCGAGACTCTGTCTGCAGG                         GTGTGGGATATTCGTACCAAGATGCAAA
genomic: CCCAACTTTGGATGTTTTATTAACTGGGGGG-CGAGACTCTGTCTGCAGGgtaaggcaaa ... ttatttgcagGTGTGGGATATTCGTACCAAGATGCAAA
EST: gi|125018998|gb|EL091267.1|EL091267
EST:     TTTTATTTAACTGGGGGGCGGAGACTCTGTCTGCAGG                         GTGTGGGATATTCGTACCAAGATGCAAATTTTTGCACTCTCAGGACATGAC
genomic: TTTTA-TTAACTGGGGGGC-GAGACTCTGTCTGCAGGgtaaggcaaa ... ttatttgcagGTGTGGGATATTCGTACCAAGATGCAAATTTTTGCACTCTCAGGACATGAC


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

attcttgcactttgctggatttgtagtttaaaagtccatgtttacttatttgcagGTGTGGGATATTCGTACCAAGATGCAAATTTTTGCACTCTCAGGACATGACAACACCGTTTGTTCTGTATTTACTCGTCCAACA
                                        tttactt  CT-rich tract
                  atttgtagtttaaaa  TA-rich tract