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gttagtgaaaccgttatctcccttgttttcttttggccattatgtgagaatcgagattacatgcaggtcttaactgctgtgaactaatattgcagGTTTGATCGAAAACTGAAGAACACATATGATCACCTACTCTTTAGCAG
species | Arabidopsis thaliana |
transcript | AT4G14210.2 |
intron # | 10 |
splice site | 3' |
intron type | U2 |
EST: AGAAATTGGATAAATTAGTTGGAGTACCAGTTATTAATGTTCATAATATG GTTTGATCGAAAACTGAAGAACACATATGATCACCTACTCTTTAGCAGAAEST: gi|86074019|gb|DR369776.1|DR369776
genomic: AGAAATTGGATAAATTAGTTGGAGTACCAGTTATTAATGTTCATA-TATGgttagtgaaa ... aatattgcagGTTTGATCGAAAACTGAAGAACACATATGATCACCTACTCTTTAGCAGAA
EST: AAGAAATTGGATAAATTAGTTGGAGTACCAGTTATTAATGTTCATATATG GTTTGATCGAAAACTGAAGAACACATATGATCACEST: gi|86074018|gb|DR369775.1|DR369775
genomic: AAGAAATTGGATAAATTAGTTGGAGTACCAGTTATTAATGTTCATATATGgttagtgaaa ... aatattgcagGTTTGATCGAAAACTGAAGAACACATATGATCAC
EST: AAGAAATTGGATAAATTAGTTGGAGTACCAGTTATTAATGTTCATATATG GTTTGATCGAAAEST: gi|116473797|gb|EG516389.1|EG516389
genomic: AAGAAATTGGATAAATTAGTTGGAGTACCAGTTATTAATGTTCATATATGgttagtgaaa ... aatattgcagGTTTGATCGAAA
EST: AAGAAATTGGATAAATTAGTTGGAGTACCAGTTATTAATGTTCATATATG GTTTGATCGAAAACTGAAGAACACATATGATCACCTACTCTTTAGCAG
genomic: AAGAAATTGGATAAATTAGTTGGAGTACCAGTTATTAATGTTCATATATGgttagtgaaa ... aatattgcagGTTTGATCGAAAACTGAAGAACACATATGATCACCTACTCTTTAGCAG
tatgtgagaatcgagattacatgcaggtcttaactgctgtgaactaatattgcagGTTTGATCGAAAACTGAAGAACACATATGATCACCTACTCTTTAGCAG
aactaat putative branch site (score: 2)
aactaatatt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gttagtgaaaccgttatctcccttgttttcttttggccattatgtgagaatcgagattacatgcaggtcttaactgctgtgaactaatattgcagGTTTGATCGAAAACTGAAGAACACATATGATCACCTACTCTTTAGCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAC