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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtgagtggatacagctcaaatctgaccttcctactagttattaaattttaatatatgcattatatatttctatactatgtccttagGATGTCAAATTGTTGATTGAAGACCTTGGTGAGCTAAAACCAAGTATCTTTTGCGCCGTTCCTCGTGTCCTAGATCGAGTATACACAG

Basic information

species Arabidopsis thaliana
transcript AT4G11030.1
intron # 10
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT4G11030.1 (Arabidopsis thaliana), 3'ss of exon 10
lower sequence: GLYMA01G43470.4 (Glycine max), 3'ss of exon 10
gtgagtggatacagctca------------aatctgaccttcctactagttattaaattttaatatatgcattata--tatt-tctatactatgtccttagGATGTCAAATTGTTGATTGAAGACCTTGGTGAGCTAAAACCAAGTATCTTTTGCGCCGTTCCTCGTGTCCTAGATCGAGTATACACAG
||||||  ||  ||   |            ||    || ||     || | ||| || |||   || || | |||    ||  | ||  | ||| |  ||||||||||||||||| ||||||||  |||| || |||||||||| ||| || || || ||||| ||||| || ||| |||| ||| |||
gtgagtatatgtagtatatctgtcattacgaaatgaacatttgatgtaataattgaactttgg-atttggaatatgatcatcatttactcaatggctgtagGATGTCAAATTGTTAATTGAAGATGTTGGCGAACTAAAACCAACTATTTTCTGTGCTGTTCCCCGTGTGCTTGATAGAGTGTACTCAG

upper sequence: AT4G11030.1 (Arabidopsis thaliana), 3'ss of exon 10
lower sequence: Vv02s0025g01410.t01 (Vitis vinifera), 3'ss of exon 10
gtgagtggatacagctcaaatctgaccttcctactagtt--attaaattttaatatatgcattatatatttctatactatgtccttagGATGTCAAATTGTTGATTGAAGACCTTGGTGAGCTAAAACCAAGTATCTTTTGCGCCGTTCCTCGTGTCCTAGATCGAGTATACACAG
    ||  | |||||| |    |    || || ||  |   || |   || ||||||   |||    ||||     |       | ||||||||||||| ||| |||||||| |||| ||||||||||| | ||| || || || |||||||| ||  ||||| |  ||||  |||
----gta-agacagctaatgcattttttttcttctcctcgaatcagtgttcaatatagtaattggtcattt----gccccaatttcagGATGTCAAATTATTGGTTGAAGACATTGGGGAGCTAAAACCGACTATTTTCTGTGCTGTTCCTCGCGTATTAGATAGGATATATTCAG


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tactagttattaaattttaatatatgcattatatatttctatactatgtccttagGATGTCAAATTGTTGATTGAAGACCTTGGTGAGCTAAAACCAAGTATCTTTTGCGCCGTTCCTCGTGTCCTAGATCGAGTATACACAG
              ttttaat  putative branch site (score: 3)
                                              tgtcctt  putative PPT
      ttattaaattttaata  TA-rich tract