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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtacaataataaccatttgctcagtagtttctatcagattttaactagctttaagaccgtatgtttgattctgctgacacttgtcgagttgcacaatcttgatgtatgtgagcatatttcttgtgcagTGGGTCATTACCAATCTCAGACCTACTGGACCATCAGCTTCTAGCTTCTCGTGGACATTTGACCTAGACGGGATCGCTGAACTTTACCAGTCTTACGAAG

Basic information

species Arabidopsis thaliana
transcript AT4G10030.1
intron # 10
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|86075311|gb|DR371068.1|DR371068
EST:     TCCAATGATGTCGCACAG                         TGGGTCATTACCAATCTCAGACCTACTGGACCATCAGCTTCTAGCTTCTCG
genomic: TCCAATGATGTCGCACAGgtacaataat ... tcttgtgcagTGGGTCATTACCAATCTCAGACCTACTGGACCATCAGCTTCTAGCTTCTCG
EST: gi|125308762|gb|EL322847.1|EL322847
EST:     AGGTTCTTAAAGCTCTTATAAATGAAGGGTTTTCCAATGATGTCGCACAG                         TGGGTCATTACCAATCTCAGACCTACTGGACCATC
genomic: AGGTTCTTAAAGCTCTTATAAATGAAGGGTTTTCCAATGATGTCGCACAGgtacaataat ... tcttgtgcagTGGGTCATTACCAATCTCAGACCTACTGGACCATC


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ctgacacttgtcgagttgcacaatcttgatgtatgtgagcatatttcttgtgcagTGGGTCATTACCAATCTCAGACCTACTGGACCATCAGCTTCTAGCTTCTCGTGGACATTTGACCTAGACGGGATCGCTGAACTTTACCAGTCTTACGAAG
                                         tatttctt  CT-rich tract
                                        atatttctt  TA-rich tract