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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtatgttcttgattttccgtgttggtgcttggtattctcgtaattttgctttgtcttttgtttcgttaagataaattgtttctttctttaaattagGCGGGACTTTCCATGGCATTAGGAGCGTTTTTGGCTGGTCTACTACTTGCAGAGACTGAATTTTCCTTGCAAGTTGAATCAGATATCGCTCCATACCGTG

Basic information

species Arabidopsis thaliana
transcript AT4G00630.2
intron # 10
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT4G00630.1 (Arabidopsis thaliana), 3'ss of exon 10
lower sequence: LOC_Os04g58620.1 (Oryza sativa), 3'ss of exon 11
gtatgttcttgattttccgtgttggtgcttggtattctcgtaattttgctttgtcttttgtttcgttaagataaattgtttctttctttaaatt-agGCGGGACTTTCCATGGCATTAGGAGCGTTTTTGGCTGGTCTACTACTTGCAGAGACTGAATTTTCCTTGCAAGTTGAATCAGATATCGCTCCATACCGTG
||||||     ||||| | | ||    |   |    || | |   |||| ||  |||   | |  ||   ||   ||||||   ||| | | || |||| ||| | || |||||| | ||||| ||||||||||||||| | || ||||| || ||||| ||||| || ||||| || ||||| ||||| |||||||
gtatgtat---atttttcttattatatcccagc---cttgcatagttgcatt-ccttgaatctactttgcatg--ttgttttactctctcatttcagGCTGGATTGTCGATGGCACTGGGAGCATTTTTGGCTGGTCTATTGCTAGCAGAAACAGAATTCTCCTTACAGGTTGAGTCGGATATTGCTCCTTACCGTG

upper sequence: AT4G00630.1 (Arabidopsis thaliana), 3'ss of exon 10
lower sequence: GLYMA18G46420.1 (Glycine max), 3'ss of exon 18
--------gtatg-ttcttgattttccgtgttggtgcttggtattctcgtaattttgctttgtcttttgtttcgttaagataaattgtttctttctttaaattagGCGGGACTTTCCATGGCATTAGGAGCGTTTTTGGCTGGTCTACTACTTGCAGAGACTGAATTTTCCTTGCAAGTTGAATCAGATATCGCTCCATACCGTG
        ||  | || |  |      |||||   | |  ||||| | |   |  |    |   | |||  | |||    |   || || ||||  |||||  |||| ||||||||||||||||| ||||| |||||||||||| ||||||| ||||| |||||||||||||| || |||||||| ||||| |||||||| ||||
gatgactggtccggttttcaaaaccttgtgttcaagttcagtatttttgagttcattaaattgatcttgacttgtt----tttgtt-ttcctttacttaaaacagGCAGGACTTTCCATGGCATTGGGAGCATTTTTGGCTGGTTTACTACTGGCAGAAACTGAATTTTCCTTACAGGTTGAATCTGATATTGCTCCATATCGTG

upper sequence: AT4G00630.1 (Arabidopsis thaliana), 3'ss of exon 10
lower sequence: GLYMA09G39770.1 (Glycine max), 3'ss of exon 14
--------gtatgttcttgattttcc-gtgttggtgcttggtattctcgtaatt--ttgctttgtcttttgtttcgttaagataaattgtttctttctttaaattagGCGGGACTTTCCATGGCATTAGGAGCGTTTTTGGCTGGTCTACTACTTGCAGAGACTGAATTTTCCTTGCAAGTTGAATCAGATATCGCTCCATACCGTG
        || |||| ||||    |  |||||   | |  ||||| |  || ||  ||   |||   ||   ||  ||  | |      || ||||  |||||  |||| ||||||||||||||||| ||||| |||||||||||| ||||||| ||||| |||||||||||||| || |||||||| ||||| ||||| || ||||
gatgactggtctgtttttgaaaaccttgtgttcaagttcagtattttt-tagttcattaaattgatcttgacttgtttttgtt------ttcctttacttaaaacagGCAGGACTTTCCATGGCATTGGGAGCATTTTTGGCTGGTTTACTACTGGCAGAAACTGAATTTTCCTTACAGGTTGAATCTGATATTGCTCCTTATCGTG

upper sequence: AT4G00630.1 (Arabidopsis thaliana), 3'ss of exon 10
lower sequence: GLYMA07G08030.1 (Glycine max), 3'ss of exon 10
-----------------------------------------------------------------------------------------------gtatgttc-ttgattttccgtgttggtgcttggtattctcgt---aattttgctttgtcttttgtttcgttaagataaattgtttctttctttaaattagGCGGGACTTTCCATGGCATTAGGAGCGTTTTTGGCTGGTCTACTACTTGCAGAGACTGAATTTTCCTTGCAAGTTGAATCAGATATCGCTCCATACCGTG
                                                                                                | ||| | ||||  |   | | ||    ||  | ||   ||   ||  || ||||  |   | |||  |||| |  |||| |||||||  |||||  |||| ||||||||||||||||| || || |||||||||||| ||||||| ||||| ||||| |||||||| || |||||||| ||||| |||||||| ||||
gtaggtgttcataccgatgttttttctttcccttatttccccttggtttgggtttttgagctaagccaaggtttgacagttttcaacagttattcttgtgtccgttgaagtgatgagatgacttttttttttggtgtgccaaccttacttttaccccttttt--ttaaaaataatt-tttctttacttaaaacagGCTGGACTTTCCATGGCATTGGGGGCATTTTTGGCTGGTTTACTACTGGCAGAAACTGAGTTTTCCTTACAGGTTGAATCTGATATTGCTCCATATCGTG

upper sequence: AT4G00630.1 (Arabidopsis thaliana), 3'ss of exon 10
lower sequence: Vv15s0046g03390.t01 (Vitis vinifera), 3'ss of exon 9
-----gtatgttcttgattttccgtgttggtgcttggtattctcgtaattttgctttgtctt--ttgtttcgttaagataaattgtttctttctttaaattagGCGGGACTTTCCATGGCATTAGGAGCGTTTTTGGCTGGTCTACTACTTGCAGAGACTGAATTTTCCTTGCAAGTTGAATCAGATATCGCTCCATACCGTG
     | ||| | || ||  |   | ||  |  ||  | || |   |||   | | |||||   || |||| |||||| |||   |   |||  || ||  |||| || |||||||||||||| ||||| |||||||||||| | || |||||||| |||||||||||||| || |||||||||||||| |||||||| ||||
gtattggatgcttttcataattattattattcttt--tcttataccaatcaagttgtgtctcccttttttccttaagaaaaa--atcatttttcttgaac-agGCAGGCCTTTCCATGGCATTGGGAGCATTTTTGGCTGGTTTGCTTCTTGCAGAAACTGAATTTTCCTTACAGGTTGAATCAGATATTGCTCCATATCGTG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

aattttgctttgtcttttgtttcgttaagataaattgtttctttctttaaattagGCGGGACTTTCCATGGCATTAGGAGCGTTTTTGGCTGGTCTACTACTTGCAGAGACTGAATTTTCCTTGCAAGTTGAATCAGATATCGCTCCATACCGTG
                                  ttgtttctttcttt  CT-rich tract
                        ttaagataaattgttt  TA-rich tract