1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' |
gtatgttacagcaaaaacttcttattccagcttatagaattaaaactcaagaagataacaattttaagttccttaaacttaaattctttgtagGAAGTGGAAAGAGATGTTAAGGCACGTACGAAAGGTGAAACAGGAGCAGCTAAAACCCTTTGTTCTCCATTTGATCAGCCTGAACTCCCTGAAG
species | Arabidopsis thaliana |
transcript | AT3G62120.1 |
intron # | 10 |
splice site | 3' |
intron type | U2 |
EST: CTTAACGAAAAGAAACTCATTTTGGCTCCCTGGTGTGATGAAGAG GAAGTGGAAAGAGATGTTAAGGCACGTACGAAAGGTGAAACAGGAGCAGCTEST: gi|125246487|gb|EL260572.1|EL260572
genomic: CTTAACGAAAAGAAACTCATTTTGGCTCCCTGGTGTGATGAAGAGgtatgttaca ... ttctttgtagGAAGTGGAAAGAGATGTTAAGGCACGTACGAAAGGTGAAACAGGAGCAGCT
EST: GCTCTTAACGAAAAGAAACTCATTTTGGCTCCCTGGTGTGATGAAGAG GAAGTGGAAAGAGATGTTAAGGCACGTACGAAAGGEST: gi|116443246|gb|EG485838.1|EG485838
genomic: GCTCTTAACGAAAAGAAACTCATTTTGGCTCCCTGGTGTGATGAAGAGgtatgttaca ... ttctttgtagGAAGTGGAAAGAGATGTTAAGGCACGTACGAAAGG
EST: AAGCTCTTAACGAAAGGAAACTCATTTTGGCTCCCTGGTGTGATGAAGAG GAAGTGGAAAGAGATGTTAAGGCACGTACGAAAGGTGAAACAGGAGCAGCTEST: gi|86059719|gb|DR355476.1|DR355476
genomic: AAGCTCTTAACGAAAAGAAACTCATTTTGGCTCCCTGGTGTGATGAAGAGgtatgttaca ... ttctttgtagGAAGTGGAAAGAGATGTTAAGGCACGTACGAAAGGTGAAACAGGAGCAGCT
EST: AAGCTCTTAACGAAAAGAAACTCATTTTGGCTCCCTGGTGTGATGAAGAG GAAGTGGAAAGAGATGTTAAGGCACGTACGAAAGGTGAAACAGGAGCAGCT
genomic: AAGCTCTTAACGAAAAGAAACTCATTTTGGCTCCCTGGTGTGATGAAGAGgtatgttaca ... ttctttgtagGAAGTGGAAAGAGATGTTAAGGCACGTACGAAAGGTGAAACAGGAGCAGCT
attaaaactcaagaagataacaattttaagttccttaaacttaaattctttgtagGAAGTGGAAAGAGATGTTAAGGCACGTACGAAAGGTGAAACAGGAGCAGCTAAAACCCTTTGTTCTCCATTTGATCAGCCTGAACTCCCTGAAG
agataac putative branch site (score: 3)
ttctttgt putative PPT
ttaaacttaaattctt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtatgttacagcaaaaacttcttattccagcttatagaattaaaactcaagaagataacaattttaagttccttaaacttaaattctttgtagGAAGTGGAAAGAGATGTTAAGGCACGTACGAAAGGTGAAACAGGAGCAGCTAAAACCCTTTGTTCTCCATTTGATCAGCCTGAACTCCCTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGAAG