1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' |
gtctggaatctgaaatatttatgcttcatacttgttcaattttgccattgcaaacgttaactattctgttcattctattaaacattttgcagGTATTTGATAAAGACGTAGGTCAAGATGAGCGCCTTGGACTTGTGAAACTTCCCTTAAGCAGTTTGGAAGCCGGAGTTACAAAAGAACTGGAGCTAAATC
species | Arabidopsis thaliana |
transcript | AT3G61050.1 |
intron # | 10 |
splice site | 3' |
intron type | U2 |
EST: CGAATTGATTGCAGAGGACAAAG-AACCCAGTCGTCTCACTGTAGAG GTATTTGATAAAGACGTAGGTCAAGATGAGCGCCTTGGACTTGTGAAACTTEST: gi|164130757|gb|ES167543.1|ES167543
genomic: CGAATTGATTGCAGAGGACAAAGAAACCCAGTCG-CTCACTGTAGAGgtctggaatc ... cattttgcagGTATTTGATAAAGACGTAGGTCAAGATGAGCGCCTTGGACTTGTGAAACTT
EST: TTCGAATTGATTGCAGAGGACAAAGAAACCCAGTCGCTCACTGTAGAG GTATTTGATAAAGACGTAGGTCAAGATGAGCGCCTTGGACTTGTGAAACTTEST: gi|125195092|gb|EL210046.1|EL210046
genomic: TTCGAATTGATTGCAGAGGACAAAGAAACCCAGTCGCTCACTGTAGAGgtctggaatc ... cattttgcagGTATTTGATAAAGACGTAGGTCAAGATGAGCGCCTTGGACTTGTGAAACTT
EST: CATTCGAATTGATTGCAGAGGACAAAGAAACCCAGTCGCTCACTGTAGAG GTATTTGATAAAGACGTAGGTCAAGATGAGCGCCTTGGA
genomic: CATTCGAATTGATTGCAGAGGACAAAGAAACCCAGTCGCTCACTGTAGAGgtctggaatc ... cattttgcagGTATTTGATAAAGACGTAGGTCAAGATGAGCGCCTTGGA
aattttgccattgcaaacgttaactattctgttcattctattaaacattttgcagGTATTTGATAAAGACGTAGGTCAAGATGAGCGCCTTGGACTTGTGAAACTTCCCTTAAGCAGTTTGGAAGCCGGAGTTACAAAAGAACTGGAGCTAAATC
cgttaac putative branch site (score: 3)
attctattaaacattt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtctggaatctgaaatatttatgcttcatacttgttcaattttgccattgcaaacgttaactattctgttcattctattaaacattttgcagGTATTTGATAAAGACGTAGGTCAAGATGAGCGCCTTGGACTTGTGAAACTTCCCTTAAGCAGTTTGGAAGCCGGAGTTACAAAAGAACTGGAGCTAAATC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGCT