Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   		10  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtgagtgttgttgcatcattttgatctttttctcctctgaatctgtttttgatgggttttggttgcattttagGACGGATTGTGGAGTATGATGAGCCAATGAAGTTGATGAAGGATGAGAACTCTTTGTTCGGAAAGCTTGTGAAAGAGTATTGGTCTCATTACAACTCGGC

Basic information

species Arabidopsis thaliana
transcript AT3G59140.1
intron # 10
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT3G59140.1 (Arabidopsis thaliana), 3'ss of exon 10
lower sequence: GLYMA10G37150.1 (Glycine max), 3'ss of exon 11
---------------------------------gtgagtgttgttgcatcattttgatctttttctcctctgaatctgtttttgatgggttttggttgcattttagGACGGATTGTGGAGTATGATGAGCCAATGAAGTTGATGAAGGATGAGAACTCTTTGTTCGGAAAGCTTGTGAAAGAGTATTGGTCTCATTACAACTCGGC
                                      |||   |  | ||||| ||| || || |      ||     || | || | ||||| ||     | ||||    | ||||||||||||||||||||||| |||||||||   ||    ||  |||| ||| | ||||| || || |||||||||||||   | || ||
ctagttggtttcacatttgaacttctatggcataaagatgtgaataaaacattt-gattttgttttaagaaaaagaaaattattattgattttgttt-----tcagGAGAATTGGTGGAGTATGATGAGCCAATGAACTTGATGAAGAGAGAAGGATCACTGTTTGGACAACTTGTCAAGGAATATTGGTCTCATTTGCAGTCTGC
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|124915321|gb|EH989195.1|EH989195
EST:     CCGTATCCCTACCGTTATGGATTGTACAATGGTTCTCTCCATCAGCGACG                         GACGGATTGTGGAGTATGATGAGCCAATGAAGTTGA
genomic: CCGTATCCCTACCGTTATGGATTGTACAATGGTTCTCTCCATCAGCGACGgtgagtgttg ... tgcattttagGACGGATTGTGGAGTATGATGAGCCAATGAAGTTGA






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ttttgatctttttctcctctgaatctgtttttgatgggttttggttgcattttagGACGGATTGTGGAGTATGATGAGCCAATGAAGTTGATGAAGGATGAGAACTCTTTGTTCGGAAAGCTTGTGAAAGAGTATTGGTCTCATTACAACTCGGC
                            ttttgat  putative branch site (score: 4)
     atcttttt  TA-rich tract