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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtacttgatccatttctagaactatttgcttggttttgtcaatgaatctttttgctgacaccgttcaatgaaaacataaaactccagCTTGTTTGGGATAGTTGGGGTGACTGACAGATGTCTGGAGACCCTTTCGCAGACATGCTCGACTACACTCACCACTCTTGATGTCAATGGCTGCACCGGC

Basic information

species Arabidopsis thaliana
transcript AT3G58530.1
intron # 10
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|86079798|gb|DR375555.1|DR375555
EST:     GCAGGTGTGAATACCATTGCTAATAGTTGTACCTCCCTCGAATTTCTCAG                         CTTGTTTGGGATAGTTGGGGTGACTGACAGATGTCTGGAGACCCTTTCGCA
genomic: GCAGGTGTGAATACCATTGCTAATAGTTGTACCTCCCTCGAATTTCTCAGgtacttgatc ... aaaactccagCTTGTTTGGGATAGTTGGGGTGACTGACAGATGTCTGGAGACCCTTTCGCA






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gttttgtcaatgaatctttttgctgacaccgttcaatgaaaacataaaactccagCTTGTTTGGGATAGTTGGGGTGACTGACAGATGTCTGGAGACCCTTTCGCAGACATGCTCGACTACACTCACCACTCTTGATGTCAATGGCTGCACCGGC
                    tgctgac  putative branch site (score: 2)
                                  aatgaaaacataaaa  TA-rich tract