1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' |
gtattcattcaccagtttccgaagtattggtcctaattcctaaaattagaaaagacatgcaatgcattagctcataccatgcttaagtaagatgtcaattagggccaaagctttgtttctgcccaccccggaaaaatagggtagactagaattctcctccataacggtgtttgatatttgacttgcatgtttgcagGAGAACATTGTGTCTGTGAAGAAGAAGCTTTTCTTTTGGCAGAGAATATTTTTTCATAATGTCGTGTGAAGATATGATCGCTGTCCTGCAATACTTTTGA
species | Arabidopsis thaliana |
transcript | AT3G54660.1 |
intron # | 10 |
splice site | 3' |
intron type | U2 |
EST: AGGTTGCAAAAAAGATTGTATTTACGGCATTGGAGCCCCCTGATAAG GAGAACATTGTGTCTGTGAAGAAGAAGCTTTTCTTTTGGCAGEST: gi|116472768|gb|EG515360.1|EG515360
genomic: AGGTTGCAAAAAAGATTGTATTTACGGCATTGGAGCCCCCTGATAAGgtattcattc ... atgtttgcagGAGAACATTGTGTCTGTGAAGAAGAAGCTTTTCTTTTGGCAG
EST: AGAAGGTTGCAAAAAAGATTGTATTTACGGCATTGGAGCCCCCTGATAAG GAGAACATTGTGTCTGTGAAGAAGAAGCTTTTCTTTTGGCAGAGAATATTTEST: gi|86061670|gb|DR357427.1|DR357427
genomic: AGAAGGTTGCAAAAAAGATTGTATTTACGGCATTGGAGCCCCCTGATAAGgtattcattc ... atgtttgcagGAGAACATTGTGTCTGTGAAGAAGAAGCTTTTCTTTTGGCAGAGAATATTT
EST: AGAAGGTTGCAAAAMAGATTGTATTTACGGCATTGGAGCTCCCTGATAAG -AGAACATTGTGTCTGTGAAGAAGAAGCTTTTCTTTTGGCAGAGAATATTTEST: gi|124762219|gb|EH852349.1|EH852349
genomic: AGAAGGTTGCAAAAAAGATTGTATTTACGGCATTGGAGCCCCCTGATAAGgtattcattc ... atgtttgcagGAGAACATTGTGTCTGTGAAGAAGAAGCTTTTCTTTTGGCAGAGAATATTT
EST: TGTATTTACGGCATTGGAGCCCCCTGATAAG GAGAACATTGTGTCTGTGAAGAAGAAGCTTTTCTTTTGGCAGAGAATATTTEST: gi|86061672|gb|DR357429.1|DR357429
genomic: TGTATTTACGGCATTGGAGCCCCCTGATAAGgtattcattc ... atgtttgcagGAGAACATTGTGTCTGTGAAGAAGAAGCTTTTCTTTTGGCAGAGAATATTT
EST: AGAAGGTTGCAAAAAAGATTGTATTTACGGCATTGGAGCTCCCTGATAAG GAGAACATTGTGTCTGTGAAGAAGAAGCTTTTCTTTTGGCAGAGAATATTTEST: gi|86061674|gb|DR357431.1|DR357431
genomic: AGAAGGTTGCAAAAAAGATTGTATTTACGGCATTGGAGCCCCCTGATAAGgtattcattc ... atgtttgcagGAGAACATTGTGTCTGTGAAGAAGAAGCTTTTCTTTTGGCAGAGAATATTT
EST: AGAAGGTTGCAAAAWAGATTGTATTTACGGCATTGGAGCTCCCTGATAAG GAGAACATTGTGTCTGTGAAGAAGAAGCTTTTCTTTTGGCAGAGAATATTTEST: gi|86061671|gb|DR357428.1|DR357428
genomic: AGAAGGTTGCAAAAAAGATTGTATTTACGGCATTGGAGCCCCCTGATAAGgtattcattc ... atgtttgcagGAGAACATTGTGTCTGTGAAGAAGAAGCTTTTCTTTTGGCAGAGAATATTT
EST: AGAAGGTTGCAAAAAAGATTGTATTTACGGCATTGGAGCTCCCTGATAAG GAGAACATTGTGTCTGTGAAGAAGAAGCTTTTCTTTTGGCAGAGAATATTTEST: gi|86078733|gb|DR374490.1|DR374490
genomic: AGAAGGTTGCAAAAAAGATTGTATTTACGGCATTGGAGCCCCCTGATAAGgtattcattc ... atgtttgcagGAGAACATTGTGTCTGTGAAGAAGAAGCTTTTCTTTTGGCAGAGAATATTT
EST: AGAAGGTTGCAAAAAAGATTGTATTTACGGCATTGGAGCTCCCTGATAAG GAGAACATTGTGTCTGTGAAGAAGAAGCTTTTCTTTTGGCAGAGAATATTTEST: gi|86086942|gb|DR382701.1|DR382701
genomic: AGAAGGTTGCAAAAAAGATTGTATTTACGGCATTGGAGCCCCCTGATAAGgtattcattc ... atgtttgcagGAGAACATTGTGTCTGTGAAGAAGAAGCTTTTCTTTTGGCAGAGAATATTT
EST: AGAAGGTTGCAAAAAAGATTGTATTTACGGCATTGGAGCTCCCTGATAAG GAGAACATTGTGTCTGTGAAGAAGAAGCTTTTYTTTTGGCAGAGAATATTT
genomic: AGAAGGTTGCAAAAAAGATTGTATTTACGGCATTGGAGCCCCCTGATAAGgtattcattc ... atgtttgcagGAGAACATTGTGTCTGTGAAGAAGAAGCTTTTCTTTTGGCAGAGAATATTT
tagactagaattctcctccataacggtgtttgatatttgacttgcatgtttgcagGAGAACATTGTGTCTGTGAAGAAGAAGCTTTTCTTTTGGCAGAGAATATTTTTTCATAATGTCGTGTGAAGATATGATCGCTGTCCTGCAATACTTTTGA
tttgatattt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtattcattcaccagtttccgaagtattggtcctaattcctaaaattagaaaagacatgcaatgcattagctcataccatgcttaagtaagatgtcaattagggccaaagctttgtttctgcccaccccggaaaaatagggtagactagaattctcctccataacggtgtttgatatttgacttgcatgtttgcagGAGAACATTGTGTCTGTGAAGAAGAAGCTTTTCTTTTGGCAGAGAATATTTTTTCATAATGTCGTGTGAAGATATGATCGCTGTCCTGCAATACTTTTGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGA