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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gttctgatcagcatttttatttaagatgttttaaatttctttcttgagtcagaaacagtcgcaactgttaaggccatagtctttgtacttttctacatgccatatatacctaagatacattctgcttattttcttttccagGTCCAACTCATGTCCTGGTTGTACGTGGGTTGGATGAAGATGCTGATGAGGAAATGCTTCGGTATGAATTTTCCAAACATGCTCCTATCAAG

Basic information

species Arabidopsis thaliana
transcript AT3G54230.1
intron # 10
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT3G54230.2 (Arabidopsis thaliana), 3'ss of exon 10
lower sequence: LOC_Os02g07070.1 (Oryza sativa), 3'ss of exon 10
gttctgatcagcatttttatttaagatgttttaaatttctttcttgagtcagaaacagtcgcaactgttaaggccatagtctt----tgtacttttctacatgccatatatacctaagatacatt-ctgcttattttcttttccagGTCCAACTCATGTCCTGGTTGTACGTGGGTTGGATGAAGATGCTGATGAGGAAATGCTTCGGTATGAATTTTCCAAACATGCTCCTATCAAG
                                                                     || ||  |  ||||    ||||   || |  |  | || | | ||  || | | ||  |    | |  | ||| ||||||||||||||||  | ||||| |||||  |||||||| ||||||| |||||||||||||| ||||||||| |||| ||||| ||||| |||
-------------------------------------------------------------------gcaaagctctgttcttctattgtaggattattaaaactattt-tgcc--agttgccttattagacactagcattttcagGTCCAACTCATGTTTTAGTTGTTCGTGGTCTGGATGAAAATGCTGACGAGGAAATGCTTCGATATGAATTTGCCAAGCATGCACCTATAAAG

upper sequence: AT3G54230.2 (Arabidopsis thaliana), 3'ss of exon 10
lower sequence: GRMZM2G173777_T01 (Zea mays), 3'ss of exon 9
gttctgatcagcatttttatttaagatgttttaaatttctttcttgagtcagaaacagtcgcaactgttaagg--ccatagtctttgtacttttctacatgccatatatacctaagatacattctgcttattttcttttccagGTCCAACTCATGTCCTGGTTGTACGTGGGTTGGATGAAGATGCTGATGAGGAAATGCTTCGGTATGAATTTTCCAAACATGCTCCTATCAAG
                                                            |||| | ||  |   ||||||| ||  | ||    | ||||  ||||||      |    |||  | || |  || ||| ||||||||||||||||  | ||||| ||||| ||||||||| ||||||||||||||||||||||||| |||||| | || || || || || |||
------------------------------------------------------------gcaagttttgtgcttccatagt-ttcattctggaat-catgtgatatattgtgctgccttatttag-ttgtggtcatttgcagGTCCAACTCATGTTTTAGTTGTTCGTGGCTTGGATGAAAATGCTGATGAGGAAATGCTTCGGTACGAATTTGCTAAGCACGCACCAATAAAG

upper sequence: AT3G54230.2 (Arabidopsis thaliana), 3'ss of exon 10
lower sequence: GRMZM2G151614_T03 (Zea mays), 3'ss of exon 10
gttctgatcagcatttttatttaagatgttttaaatttctttcttgagtcagaaacagtcgcaactgttaaggccatagtctttgtacttttctacatgccatatatacctaagatacattctgcttattttcttttccagGTCCAACTCATGTCCTGGTTGTACGTGGGTTGGATGAAGATGCTGATGAGGAAATGCTTCGGTATGAATTTTCCAAACATGCTCCTATCAAG
                                                                     |||  ||   |  || |   ||| |     | || |||      |    |||  | ||  | || ||| ||||||||||||||||  | ||||| ||||| || |||||| ||||||||||||||||||||||||| |||||| | || || || ||  | |||
-------------------------------------------------------------------gcaagttcagttttattctggatttatctgaactatgtattgtgctgccttatttag-ttgctgtcatttgcagGTCCAACTCATGTTTTAGTTGTTCGTGGCTTAGATGAAAATGCTGATGAGGAAATGCTTCGGTACGAATTTGCTAAGCACGCACCATTAAAG

upper sequence: AT3G54230.2 (Arabidopsis thaliana), 3'ss of exon 10
lower sequence: GLYMA08G35510.1 (Glycine max), 3'ss of exon 8
gttctgatcagcatttttatttaagatgttttaaatttctttcttgagtcagaaacagtcgcaactgttaaggccatagtctttgtacttttctacatgccatatatacctaagatacattctgcttattttcttttccagGTCCAACTCATGTCCTGGTTGTACGTGGGTTGGATGAAGATGCTGATGAGGAAATGCTTCGGTATGAATTTTCCAAACATGCTCCTATCAAG
                                                                    ||||   |||     ||||| |    ||||    | |||   |    |  | |   || || |       |||||||||||||||| || ||||| ||||| ||||||||| ||||||||||||||||||| || ||||| ||||||||||||||||| || |||
-------------------------------------------------------------------gtaag--tataactcctgtacctg---acattgactttattaatgctctgtaattaact-atatgtgcaatcagGTCCAACTCATGTGCTTGTTGTCCGTGGATTGGATGAAAATGCTGATGAGGAAATGCTCCGCTATGAGTTTTCCAAACATGCTCCGATTAAG

upper sequence: AT3G54230.2 (Arabidopsis thaliana), 3'ss of exon 10
lower sequence: GLYMA16G18030.1 (Glycine max), 3'ss of exon 8
gttctgatcagcatttttatttaagatgttttaaatttctttcttgagtcagaaacagtcgcaactgttaaggccatagtctttgtacttttc-tacatgccatatatacctaagatacattctgcttattttcttttccagGTCCAACTCATGTCCTGGTTGTACGTGGGTTGGATGAAGATGCTGATGAGGAAATGCTTCGGTATGAATTTTCCAAACATGCTCCTATCAAG
                                                                    ||||   |||      |||| |  | |  ||||  |||  |       ||     |   ||| |       ||||||||||||||||  ||||||| ||||| ||||||||| |||| |||||||||||||| || ||||| ||||||||||||||||| || |||
-------------------------------------------------------------------gtaag--tataactcccgtacctgacattgatgctttattaatgctttgtaa---ttaactatatgtgcaatcagGTCCAACTCATGTGTTGGTTGTCCGTGGATTGGATGAAAATGCGGATGAGGAAATGCTCCGCTATGAGTTTTCCAAACATGCTCCGATTAAG

upper sequence: AT3G54230.2 (Arabidopsis thaliana), 3'ss of exon 10
lower sequence: Vv02s0012g00870.t01 (Vitis vinifera), 3'ss of exon 8
gttctgatcagcatttttatttaagatgttttaaatttctttcttgagtcagaaacagtcgcaactgttaaggccatagtctttgtacttttctacatgccatatatacctaagatacattctgcttattttcttttc---cagGTCCAACTCATGTCCTGGTTGTACGTGGGTTGGATGAAGATGCTGATGAGGAAATGCTTCGGTATGAATTTTCCAAACATGCTCCTATCAAG
                                                         || | |||     |  |||| |  |||  | |    | |||     || ||  |    |  | | |||| | ||  | |     ||||||| |  |||||  ||||||| || || ||||||||| |||||||||||||||||||||| ||||||||||| ||||||||||| ||||||
---------------------------------------------------------gttggaac-----actccattgctttta-attggcatgcattaagcat-tatattcattgtaatttgctaagttgatatgtaatcagGTCCTATCCATGTTTTGGTTGTTCGAGGTTTGGATGAAAATGCTGATGAGGAAATGCTTCGTTATGAATTTTCTAAACATGCTCCAATCAAG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

acttttctacatgccatatatacctaagatacattctgcttattttcttttccagGTCCAACTCATGTCCTGGTTGTACGTGGGTTGGATGAAGATGCTGATGAGGAAATGCTTCGGTATGAATTTTCCAAACATGCTCCTATCAAG
                               cattctgcttattttc  CT-rich tract
                                       ttattttctttt  TA-rich tract