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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtcagttactccaacgtttataggaaaacctagtggagttctttagacgttttagttgaaatatatctctacgcacggactggttaagattattctgtcgtatttgcagGTCCCTGAAGGGTTTGAGATGTGTACTCGTTTGATGCTACCTGGGGAGATTGCTCTTGTTACATGCCCCCCTGATTATGCATATGACAAATTTCCGAG

Basic information

species Arabidopsis thaliana
transcript AT3G54010.2
intron # 10
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT3G54010.1 (Arabidopsis thaliana), 3'ss of exon 11
lower sequence: GLYMA03G16440.1 (Glycine max), 3'ss of exon 11
gtcagttactccaacgtttataggaaaacctagtggagttctttagacgttttagttgaaatatatctctacgcacggactggttaagattattctgtcgtatttgcagGTCCCTGAAGGGTTTGAGATGTGTACTCGTTTGATGCTACCTGGGGAGATTGCTCTTGTTACATGCCCCCCTGATTATGCATATGACAAATTTCCGAG
      || || |   | |||          |     | | || |  |   ||  |  | || |   |        |  |||  |||  | ||| | |     ||  |||| || || || ||||| ||| ||  |||||||||||| ||||| ||||| |||||||| |||||||| ||||| ||||| ||||| || ||||||||
------ta-tctagaatgtatgcactttgtcatcaatgctattaatccaaattcatcaacatttgcattggttattgttctg--taatctcattttctttctgttttagGTACCAGAGGGATTTGAAATGAGTGTTCGTTTGATGCTTCCTGGAGAGATAGCTCTTGTCACATGCCCTCCTGACTATGCTTATGATAAGTTTCCGAG


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gttgaaatatatctctacgcacggactggttaagattattctgtcgtatttgcagGTCCCTGAAGGGTTTGAGATGTGTACTCGTTTGATGCTACCTGGGGAGATTGCTCTTGTTACATGCCCCCCTGATTATGCATATGACAAATTTCCGAG
                             ttaagattatt  TA-rich tract