Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   		10  
 5'  3'   		11  
 5'  3'   		12  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtgagtaactttatgtttgcatatcttccggtacaccaccctattcatctcaccatgtctccatcaacgttttctctggattaaaccttgcagGGAGAGGCGCTTTTCCAAACGCATGAAAACTTGGAACATTTGGCCATGATGGAAAGGGTCCTAGGACCTTTACCACCTCATATGGTGCTCAGAGCCGA

Basic information

species Arabidopsis thaliana
transcript AT3G53570.2
intron # 10
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT3G53570.2 (Arabidopsis thaliana), 3'ss of exon 10
lower sequence: GRMZM2G386991_T01 (Zea mays), 3'ss of exon 9
--------------------------gtgagtaactttatgtttgc-atatcttccggtacaccaccctattcatctcaccatgtctccatcaacgttttctctggatt-----aaaccttgcagGGAGAGGCGCTTTTCCAAACGCATGAAAACTTGGAACATTTGGCCATGATGGAAAGGGTCCTAGGACCTTTACCACCTCATATGGTGCTCAGAGCCGA
                             | |   || || ||  | ||||||  ||  || |     |  |  |||    | |||||  |     |||| | ||  ||      |   |   |||| || || || || ||||| |||||||||||||| |||||||| |||||||| | |||| |||| ||| | |||   |||||| |  ||||||| ||
gttagtttactaagactctgcattggagtactggattaatcttgaccatatctgtcgcaactctgtggtgcttgtcttgataagtctctcttgcaattttttttgttttttcatgataatattagGGGGAAGCTCTCTTTCAAACACATGAAAACTTGGAGCATTTGGCTATGATGGAGAAGGTCTTAGGGCCTCTCCCAAAGCATATGATTGTCAGAGCTGA

upper sequence: AT3G53570.2 (Arabidopsis thaliana), 3'ss of exon 10
lower sequence: GLYMA03G33100.1 (Glycine max), 3'ss of exon 9
-------gtgagtaactttatgtttg-catatcttccggtacaccaccctattcatctcaccatgtctccatcaacgttttctctggattaaaccttgcagGGAGAGGCGCTTTTCCAAACGCATGAAAACTTGGAACATTTGGCCATGATGGAAAGGGTCCTAGGACCTTTACCACCTCATATGGTGCTCAGAGCCGA
        | |  |  ||  ||  || | |         ||   ||  ||| || |||    | |  |  || |  ||| |   |   |  |     |||||||||||| ||||||||||| ||||| |||||||||||| | |||||||||||||| || ||||| ||  |||| || ||||||||| |||| |||||
aaacttgtttatgagtttcgtgagtgacttgagcaattttagttcatactactcttctttttagggtttaat-agtgttcttattcattgcatatgagcagGGAGAGGCACTTTTCCAAACACATGAGAACTTGGAACATCTTGCCATGATGGAAAGAGTTCTAGGGCCACTACCTCCCCATATGGTGGTCAGGGCCGA

upper sequence: AT3G53570.2 (Arabidopsis thaliana), 3'ss of exon 10
lower sequence: GLYMA19G35800.1 (Glycine max), 3'ss of exon 7
------gtgagtaacttt-atgtttg-catatcttccggtacaccaccctattcatctcaccatgtctccatcaacgttttctctggattaaaccttgcagGGAGAGGCGCTTTTCCAAACGCATGAAAACTTGGAACATTTGGCCATGATGGAAAGGGTCCTAGGACCTTTACCACCTCATATGGTGCTCAGAGCCGA
      ||   ||| |||  ||  || | |         ||   ||   || || | |      |  |  || |  ||| |   |   |  |     ||||||||||||  |||||||||| ||||| |||||||||||| | ||||||||||| || ||  ||| |||  |||| ||  |||||||| |||| | |||
aaacttgtttataattttcgtgagtgacttgagcaattttagttcatattactctttttttagggggtttat-agtgttattattcattgcatatgagcagGGAGAGGCAGTTTTCCAAACACATGAGAACTTGGAACATCTTGCCATGATGGAGAGAGTTTTAGAACCACTACCTCCGAATATGGTGGTCAGGGTCGA

upper sequence: AT3G53570.2 (Arabidopsis thaliana), 3'ss of exon 10
lower sequence: Vv08s0040g02640.t01 (Vitis vinifera), 3'ss of exon 9
gtgagtaactttatgtttgcatatcttccggtacaccaccctattcatc-tcaccatgtctccatca------acgttttctctggattaaac-cttgcagGGAGAGGCGCTTTTCCAAACGCATGAAAACTTGGAACATTTGGCCATGATGGAAAGGGTCCTAGGACCTTTACCACCTCATATGGTGCTCAGAGCCGA
     | ||| |  || || ||||     | |  |     |||||| |  |    |||| |  ||        |  |||  |||   |||  | || |||||| ||||| ||||||||||| ||||| |||||||||||| | || |||||||| |||||  | |||||| | || |  ||||||||||| ||||| ||
-aatatgactatgagtctgaatattgattgttggatgtttctattcttgattgtgatgtttggatttgaggttatatttcttctcttttactcactggcagGGGGAGGCCCTTTTCCAAACACATGAGAACTTGGAACATCTTGCAATGATGGAGAGGGTGTTGGGACCTCTGCCCCAACATATGGTGCTGAGAGCTGA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ccctattcatctcaccatgtctccatcaacgttttctctggattaaaccttgcagGGAGAGGCGCTTTTCCAAACGCATGAAAACTTGGAACATTTGGCCATGATGGAAAGGGTCCTAGGACCTTTACCACCTCATATGGTGCTCAGAGCCGA
        atctcac  putative branch site (score: 3)
                                         attaaa  TA-rich tract