Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   		10  
 5'  3'   		11  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaaaagaaatagatcttccttcctcctagccccatacttaatttggagtcattaatcagactttctgcttttgaatctggtgaatgtgtagGTTCAGGCAAAGTTGGAACCACAAAACTCAGCTGGAGCTTTTTGTGGATCCTTATAATCGGGGTGGGTGTTGCAGGTCTTTCTGGATATGCAGTCTACAA

Basic information

species Arabidopsis thaliana
transcript AT3G52850.1
intron # 10
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|86074500|gb|DR370257.1|DR370257
EST:     CAGCTGCAGCAACGGTTTGCTTTACATGCGTGAGCACGACACTTGCATAG                         GTTCAGGCAAAGTTGGAACCACAAAACTCAGCTGGAGCTTTTTGTGGATCC
genomic: CAGCTGCAGCAACGGTTTGCTTTACATGCGTGAGCACGACACTTGCATAGgtaaaagaaa ... gaatgtgtagGTTCAGGCAAAGTTGGAACCACAAAACTCAGCTGGAGCTTTTTGTGGATCC
EST: gi|125191616|gb|EL206570.1|EL206570
EST:     CTGCAGCAACGGTTTGCTTTACATGCGTGAGCACGACACTTGCATAG                         GTTCAGGCAAAGTTGGAACCACAAAACTCAGCTGGAGTCTTTTTGTGGATC
genomic: CTGCAGCAACGGTTTGCTTTACATGCGTGAGCACGACACTTGCATAGgtaaaagaaa ... gaatgtgtagGTTCAGGCAAAGTTGGAACCACAAAACTCAGCTGGAG-CTTTTTGTGGATC
EST: gi|125241655|gb|EL255740.1|EL255740
EST:     CAGCTGCAGCAACGGTTTGCTTTACACGCGTGAGCACGACACTTGCATAG                         GTTCAGGCAAAGTTGGAACCACAAAACTCAG
genomic: CAGCTGCAGCAACGGTTTGCTTTACATGCGTGAGCACGACACTTGCATAGgtaaaagaaa ... gaatgtgtagGTTCAGGCAAAGTTGGAACCACAAAACTCAG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

cttaatttggagtcattaatcagactttctgcttttgaatctggtgaatgtgtagGTTCAGGCAAAGTTGGAACCACAAAACTCAGCTGGAGCTTTTTGTGGATCCTTATAATCGGGGTGGGTGTTGCAGGTCTTTCTGGATATGCAGTCTACAA
             cattaat  putative branch site (score: 3)
            tcattaat  TA-rich tract