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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gttttcttctgttccatcttatttccaaatgtcatatgtcacacaaggtttacccagaaagtaaatgagatagtaaaaccaaaacgaaagttagccacaatcatcttgtttttatgcaaaacagGTAGAGATACAATCTGGAAGACCACATCAAATCCGGATTCATCTTGCATACATGGGACATCCCTTGGTAG

Basic information

species Arabidopsis thaliana
transcript AT3G52260.2
intron # 10
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|116399467|gb|EG442059.1|EG442059
EST:     AAGTATTTGTTCTGGAGAGGGACAGGGNNNNNNNTTGCTCGCTTGTTAAG                         GTAGAGATACAATCTGGAAGACCACATCAAATCCGGATTCATCTTGCATAC
genomic: AAGTATTTGTTCTGGAGAGGGACAGGGAAAAAAATTGCTCGCTTGTTAAGgttttcttct ... tgcaaaacagGTAGAGATACAATCTGGAAGACCACATCAAATCCGGATTCATCTTGCATAC
EST: gi|116471213|gb|EG513805.1|EG513805
EST:     AAGTATTTGTTCTGGAGAGGGACAGGGNNNNNNNTTGCTCGCTTGTTAAG                         GTAGAGATACAATCTGGAAGACCACATCAAATCCGGATTCATCTTGCATAC
genomic: AAGTATTTGTTCTGGAGAGGGACAGGGAAAAAAATTGCTCGCTTGTTAAGgttttcttct ... tgcaaaacagGTAGAGATACAATCTGGAAGACCACATCAAATCCGGATTCATCTTGCATAC


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

atagtaaaaccaaaacgaaagttagccacaatcatcttgtttttatgcaaaacagGTAGAGATACAATCTGGAAGACCACATCAAATCCGGATTCATCTTGCATACATGGGACATCCCTTGGTAG
                                       tttttat  CT-rich tract
                                    ttgtttttat  TA-rich tract