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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtataacgctttctgaggatgtataagcgtgttaagtttattcatctgtagtacttttttttaatgctttaagtagttctggttgttgctaatagacattgttgtctctcttttttcctttagGGATCATGTGTTACTCAACTATCTGCCACAGGAAAGCTTTGTGATGACAAGGCAGCAAAACAGATCGTCGCATTTCTTAGCGCTCCATTGGAAAAGTATA

Basic information

species Arabidopsis thaliana
transcript AT3G51310.1
intron # 10
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|125132752|gb|EL174615.1|EL174615
EST:     ATCGTCTGGACTATGTGGACCAAGTTTTG                         GGTATCATGTGTTACTCAACTATCTGCCACAGGAAAGCTTTGTGATGACAA
genomic: ATCGTCTGGACTATGTGGACCAAGTTTTGgtataacgct ... tttcctttagGG-ATCATGTGTTACTCAACTATCTGCCACAGGAAAGCTTTGTGATGACAA






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ttaagtagttctggttgttgctaatagacattgttgtctctcttttttcctttagGGATCATGTGTTACTCAACTATCTGCCACAGGAAAGCTTTGTGATGACAAGGCAGCAAAACAGATCGTCGCATTTCTTAGCGCTCCATTGGAAAAGTATA
                  tgctaat  putative branch site (score: 2)
                            cattgttgtctctctt  putative PPT
                                        tctttttt  TA-rich tract